miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 5' -54.8 NC_001847.1 + 691 0.66 0.928785
Target:  5'- uGUGUUCGCAcagacucgucuuuauUGCCGccguCGCGCCCc--- -3'
miRNA:   3'- -CAUAAGCGU---------------AUGGCc---GCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 1825 0.74 0.518209
Target:  5'- ----gCGCucacguCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGuau---GGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 3474 0.69 0.772933
Target:  5'- ----gCGCGcGCCGGCGCGCCg---- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGgcaac -5'
6367 5' -54.8 NC_001847.1 + 3906 0.66 0.902945
Target:  5'- cGUAgccagCGCGggcGCCGGUugcGCGCCCGc-- -3'
miRNA:   3'- -CAUaa---GCGUa--UGGCCG---CGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 4030 0.67 0.896412
Target:  5'- -----aGCAUACCGcgccGCGCGCCCc--- -3'
miRNA:   3'- cauaagCGUAUGGC----CGCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 4227 0.74 0.538285
Target:  5'- ----gCGCgGUGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCG-UAUGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 4957 0.66 0.902945
Target:  5'- ---cUCGC-UAUCGcGCGCGCCgGggGg -3'
miRNA:   3'- cauaAGCGuAUGGC-CGCGCGGgCaaC- -5'
6367 5' -54.8 NC_001847.1 + 6334 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 6503 0.68 0.852359
Target:  5'- gGUAgcgGCGUcGCCGGCGCGCUCa--- -3'
miRNA:   3'- -CAUaagCGUA-UGGCCGCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 7941 0.66 0.921081
Target:  5'- --uUUUGCAgcUugCGGCGUaGCCCGg-- -3'
miRNA:   3'- cauAAGCGU--AugGCCGCG-CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10209 0.66 0.926634
Target:  5'- ----cCGCcggGCCcagGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGua-UGG---CCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10234 0.7 0.723831
Target:  5'- ---gUCGCcc-CCGGCGCGCCUGc-- -3'
miRNA:   3'- cauaAGCGuauGGCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10428 0.72 0.651918
Target:  5'- -gGUUCGCGcUGCCGccccCGCGCCCGg-- -3'
miRNA:   3'- caUAAGCGU-AUGGCc---GCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10553 0.68 0.860254
Target:  5'- ----cCGCGcccgGCCGGCGCcggGCCCGg-- -3'
miRNA:   3'- cauaaGCGUa---UGGCCGCG---CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10599 0.69 0.800909
Target:  5'- ----gCGCGgGCCGGCGCcgGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCG--CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10684 0.7 0.723831
Target:  5'- ---cUCGCccuCCGGuCGCGCCCGg-- -3'
miRNA:   3'- cauaAGCGuauGGCC-GCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 11295 0.69 0.79173
Target:  5'- aGUAcgCGCGaagAUgGGCGCGCCCGc-- -3'
miRNA:   3'- -CAUaaGCGUa--UGgCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 11545 0.66 0.926634
Target:  5'- -cGUUCGCGU-CUGGaguGCGCCCa--- -3'
miRNA:   3'- caUAAGCGUAuGGCCg--CGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 11601 0.67 0.882634
Target:  5'- ----gCGCugGCCGGCGCGUCCu--- -3'
miRNA:   3'- cauaaGCGuaUGGCCGCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 12313 0.67 0.896412
Target:  5'- ----gCGCGgGCCcggugGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGG-----CCGCGCGGGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.