miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 5' -54.8 NC_001847.1 + 114960 1.07 0.004205
Target:  5'- gGUAUUCGCAUACCGGCGCGCCCGUUGc -3'
miRNA:   3'- -CAUAAGCGUAUGGCCGCGCGGGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 78259 0.8 0.243277
Target:  5'- ---gUCGCcgucGCCGGCGgGCCCGUUGg -3'
miRNA:   3'- cauaAGCGua--UGGCCGCgCGGGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 49551 0.8 0.261756
Target:  5'- ----gCGCcuuUGCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGu--AUGGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 121728 0.77 0.347099
Target:  5'- ----gCGCGcGCUGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 56799 0.77 0.363123
Target:  5'- uUcgUCGCGcucacgggGCCGGCGCGCCUGggGg -3'
miRNA:   3'- cAuaAGCGUa-------UGGCCGCGCGGGCaaC- -5'
6367 5' -54.8 NC_001847.1 + 94104 0.76 0.396678
Target:  5'- --uUUUGCAUgugcuaaacGCCgcGGCGCGCCCGUUGc -3'
miRNA:   3'- cauAAGCGUA---------UGG--CCGCGCGGGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 43795 0.74 0.508282
Target:  5'- ----gCGCGcGCCGGCGCGCCgGUc- -3'
miRNA:   3'- cauaaGCGUaUGGCCGCGCGGgCAac -5'
6367 5' -54.8 NC_001847.1 + 104638 0.74 0.518209
Target:  5'- ----gCGCucacguCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGuau---GGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 1825 0.74 0.518209
Target:  5'- ----gCGCucacguCCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGuau---GGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 4227 0.74 0.538285
Target:  5'- ----gCGCgGUGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCG-UAUGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 107940 0.73 0.55862
Target:  5'- ----gCGCc--CCGGCGCGCCCGUc- -3'
miRNA:   3'- cauaaGCGuauGGCCGCGCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 52267 0.72 0.599869
Target:  5'- cGUGcUCGCGUGCCcGCGCGCCgGc-- -3'
miRNA:   3'- -CAUaAGCGUAUGGcCGCGCGGgCaac -5'
6367 5' -54.8 NC_001847.1 + 57002 0.72 0.610261
Target:  5'- gGUAUgagcCGCAgGCCGGCGCgcGCCCGcuuUUGg -3'
miRNA:   3'- -CAUAa---GCGUaUGGCCGCG--CGGGC---AAC- -5'
6367 5' -54.8 NC_001847.1 + 130907 0.72 0.631088
Target:  5'- ----gCGCAgcucgUGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCGU-----AUGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 32010 0.72 0.641507
Target:  5'- --cUUCGCGcGCCGGCG-GCCCGc-- -3'
miRNA:   3'- cauAAGCGUaUGGCCGCgCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10428 0.72 0.651918
Target:  5'- -gGUUCGCGcUGCCGccccCGCGCCCGg-- -3'
miRNA:   3'- caUAAGCGU-AUGGCc---GCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 38757 0.71 0.672683
Target:  5'- -----aGCGUGgCGGCGgGCCCGUg- -3'
miRNA:   3'- cauaagCGUAUgGCCGCgCGGGCAac -5'
6367 5' -54.8 NC_001847.1 + 48152 0.71 0.70355
Target:  5'- ----cCGCcggGCCGGCGCGCgCCGg-- -3'
miRNA:   3'- cauaaGCGua-UGGCCGCGCG-GGCaac -5'
6367 5' -54.8 NC_001847.1 + 10234 0.7 0.723831
Target:  5'- ---gUCGCcc-CCGGCGCGCCUGc-- -3'
miRNA:   3'- cauaAGCGuauGGCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10684 0.7 0.723831
Target:  5'- ---cUCGCccuCCGGuCGCGCCCGg-- -3'
miRNA:   3'- cauaAGCGuauGGCC-GCGCGGGCaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.