miRNA display CGI


Results 1 - 20 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 134606 0.66 0.76216
Target:  5'- -cCGCCAcguuccccGCGUCgGGCAcuuGCCcuCCGCGGa -3'
miRNA:   3'- gaGCGGU--------UGCAG-CUGU---CGGc-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134356 0.7 0.537595
Target:  5'- cCUCGUCgGACGaCGACGaggccggcGCCGCCgGCGGc -3'
miRNA:   3'- -GAGCGG-UUGCaGCUGU--------CGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 134235 0.81 0.124648
Target:  5'- -gCGCCGGCGggCGGCGGCCggcgGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGCa-GCUGUCGG----CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134100 0.67 0.70414
Target:  5'- -cCGCgggaGACGcUCGugcugcuGCGGCgCGCCGCGGg -3'
miRNA:   3'- gaGCGg---UUGC-AGC-------UGUCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134028 0.77 0.219548
Target:  5'- uCUCGCCAGCGUCG-CAGggGCaCGCGGc -3'
miRNA:   3'- -GAGCGGUUGCAGCuGUCggCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134022 0.67 0.728285
Target:  5'- -cCGCCGcuggugcuggaggccGCGgCGGC-GCCGCCcGCGGc -3'
miRNA:   3'- gaGCGGU---------------UGCaGCUGuCGGCGG-CGCC- -5'
6368 3' -59.3 NC_001847.1 + 133950 0.66 0.752875
Target:  5'- -gCGcCCGACGagcUGcCGGCCGCgGCGGu -3'
miRNA:   3'- gaGC-GGUUGCa--GCuGUCGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 133876 0.73 0.37761
Target:  5'- -cCGCCAACcgcugggggcUCGGCGcGCCGCUGCGGc -3'
miRNA:   3'- gaGCGGUUGc---------AGCUGU-CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 133776 0.68 0.682592
Target:  5'- -cUGCCGGCGcUCGACgggcgcaaggacauGGCCGCgcagggCGCGGc -3'
miRNA:   3'- gaGCGGUUGC-AGCUG--------------UCGGCG------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 133666 0.69 0.616145
Target:  5'- -gCGCCGcCGcugCGGCucuGCCGCgGCGGc -3'
miRNA:   3'- gaGCGGUuGCa--GCUGu--CGGCGgCGCC- -5'
6368 3' -59.3 NC_001847.1 + 133475 0.71 0.481
Target:  5'- aCUgGCC-GCG-CGACGGCCcgGCCGuCGGg -3'
miRNA:   3'- -GAgCGGuUGCaGCUGUCGG--CGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 133422 0.67 0.70414
Target:  5'- gCUgGCCGcggcGCGgCGGCGGCugaucgugcucgaCGCCGUGGa -3'
miRNA:   3'- -GAgCGGU----UGCaGCUGUCG-------------GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 133209 0.75 0.290252
Target:  5'- -gCGCCGGCGgccCGAgUGGCCGCCGCGc -3'
miRNA:   3'- gaGCGGUUGCa--GCU-GUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 133035 0.68 0.675691
Target:  5'- gCUgGCCGAgauCG-CGGCccGCCGCCGCGcGg -3'
miRNA:   3'- -GAgCGGUU---GCaGCUGu-CGGCGGCGC-C- -5'
6368 3' -59.3 NC_001847.1 + 132869 0.75 0.296887
Target:  5'- -cCGCCGACGgCGGCuuCCGCCGCGu -3'
miRNA:   3'- gaGCGGUUGCaGCUGucGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 132842 0.68 0.655894
Target:  5'- gUCGCCAugG---GCAGCCGUcuuggacuuuggCGCGGa -3'
miRNA:   3'- gAGCGGUugCagcUGUCGGCG------------GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132788 0.77 0.235717
Target:  5'- -cCGCCGACG-CGGCcgGGCCGgCGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUG--UCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132708 0.7 0.566759
Target:  5'- --aGgCGGCGgcccUGcCGGCCGCCGCGGg -3'
miRNA:   3'- gagCgGUUGCa---GCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132689 0.67 0.734012
Target:  5'- -cCGCCcgcuCGaUCGGgAGCuCGCUGCGGc -3'
miRNA:   3'- gaGCGGuu--GC-AGCUgUCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132556 0.71 0.508967
Target:  5'- gCUCGCguGCGgccgCGGCGGCCG-CGCaGGc -3'
miRNA:   3'- -GAGCGguUGCa---GCUGUCGGCgGCG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.