miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 5' -60.4 NC_001847.1 + 22467 0.66 0.701593
Target:  5'- gGCGGCaggaGCCGucgcAGGugGggcaaggcUGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU----UCCugC--------ACC-GCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 73717 0.66 0.711404
Target:  5'- gGCGGCgcgGCCGcGGGCGUcgagGGC-CGGCUg -3'
miRNA:   3'- -UGCUG---CGGUuCCUGCA----CCGcGCCGAg -5'
6370 5' -60.4 NC_001847.1 + 81244 0.66 0.681811
Target:  5'- gGCGGgGCCGucgcgAGGACGgggGGCccgcccgcccccGCGGCg- -3'
miRNA:   3'- -UGCUgCGGU-----UCCUGCa--CCG------------CGCCGag -5'
6370 5' -60.4 NC_001847.1 + 46954 0.66 0.690737
Target:  5'- gGCGAaGCCAAGGAgccggccccacuuUGggaGGCGCaGGCUg -3'
miRNA:   3'- -UGCUgCGGUUCCU-------------GCa--CCGCG-CCGAg -5'
6370 5' -60.4 NC_001847.1 + 22392 0.66 0.691726
Target:  5'- -aGGCGCCcGGGcCGcGGCgaGCGuGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCuGCaCCG--CGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 98243 0.66 0.691726
Target:  5'- gGCGACGCC---GugGcGGCGgGGCa- -3'
miRNA:   3'- -UGCUGCGGuucCugCaCCGCgCCGag -5'
6370 5' -60.4 NC_001847.1 + 42951 0.66 0.691726
Target:  5'- cCGACGCCGcgcgcggggGGGGCG-GGCcGcCGGC-Cg -3'
miRNA:   3'- uGCUGCGGU---------UCCUGCaCCG-C-GCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 56819 0.66 0.691726
Target:  5'- gGCG-CGCCuGGGGGCGcggggagGGgGCGGCcCa -3'
miRNA:   3'- -UGCuGCGG-UUCCUGCa------CCgCGCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 3893 0.66 0.691726
Target:  5'- cGCGGCGCCGcGGcguagccaGCGcgGGCGcCGGUUg -3'
miRNA:   3'- -UGCUGCGGUuCC--------UGCa-CCGC-GCCGAg -5'
6370 5' -60.4 NC_001847.1 + 17834 0.66 0.695679
Target:  5'- uGCGGCGCacgucggcgaaacaGAGGuCGUcgGGCGCGGggCg -3'
miRNA:   3'- -UGCUGCGg-------------UUCCuGCA--CCGCGCCgaG- -5'
6370 5' -60.4 NC_001847.1 + 68784 0.66 0.701593
Target:  5'- uCGGCGCCAcgGGGACGaucGCcacgGCGGCg- -3'
miRNA:   3'- uGCUGCGGU--UCCUGCac-CG----CGCCGag -5'
6370 5' -60.4 NC_001847.1 + 130843 0.66 0.711404
Target:  5'- gGCGGCGCgCGAGuaccaaGGCGccGGCGCGcGcCUCg -3'
miRNA:   3'- -UGCUGCG-GUUC------CUGCa-CCGCGC-C-GAG- -5'
6370 5' -60.4 NC_001847.1 + 128102 0.66 0.701593
Target:  5'- gGCGAaaGCCcaaacGACGUGGCGCuGGCg- -3'
miRNA:   3'- -UGCUg-CGGuuc--CUGCACCGCG-CCGag -5'
6370 5' -60.4 NC_001847.1 + 128805 0.66 0.701593
Target:  5'- cGCGGuugcCGCCGGGGcacccgcguACGUGGCcGCGcGCaUCg -3'
miRNA:   3'- -UGCU----GCGGUUCC---------UGCACCG-CGC-CG-AG- -5'
6370 5' -60.4 NC_001847.1 + 91662 0.66 0.701593
Target:  5'- gGCGGCGCgGcGGGACGcgauCGCGcGCUCg -3'
miRNA:   3'- -UGCUGCGgU-UCCUGCacc-GCGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 32620 0.66 0.711404
Target:  5'- -gGACGCgauCAccGGCGcGGCGCGcGCUCu -3'
miRNA:   3'- ugCUGCG---GUucCUGCaCCGCGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 52760 0.66 0.711404
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 76715 0.66 0.711404
Target:  5'- gGCG-CGCCGggaAGGACGgucgGGCGgGGa-- -3'
miRNA:   3'- -UGCuGCGGU---UCCUGCa---CCGCgCCgag -5'
6370 5' -60.4 NC_001847.1 + 132143 0.66 0.711404
Target:  5'- gGCGGCGCugcugccgcgCAGGGugG-GGC-CGGCg- -3'
miRNA:   3'- -UGCUGCG----------GUUCCugCaCCGcGCCGag -5'
6370 5' -60.4 NC_001847.1 + 59725 0.66 0.711404
Target:  5'- cGCGAuCGCgCucGG-CGUccGGCGCGaGCUCg -3'
miRNA:   3'- -UGCU-GCG-GuuCCuGCA--CCGCGC-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.