miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 5' -60.4 NC_001847.1 + 111818 1.09 0.000954
Target:  5'- gACGACGCCAAGGACGUGGCGCGGCUCa -3'
miRNA:   3'- -UGCUGCGGUUCCUGCACCGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 7376 0.83 0.070302
Target:  5'- cCGGCGCCGcugacaguggAGGACGUGGCGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 77800 0.82 0.084447
Target:  5'- -gGAUGUCugGAGGACGUGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGG--UUCCUGCACCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 42425 0.81 0.093709
Target:  5'- gACGGCGCCGguGGcGGCGaUGGCGCGcGCUCg -3'
miRNA:   3'- -UGCUGCGGU--UC-CUGC-ACCGCGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 43109 0.8 0.103929
Target:  5'- cACGuACGCCGAuGACGUGGaGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUcCUGCACCgCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 51541 0.78 0.137674
Target:  5'- gGCGGCGCCcAGG-CGUcGGCGCaGCUCg -3'
miRNA:   3'- -UGCUGCGGuUCCuGCA-CCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 41806 0.78 0.141198
Target:  5'- cGCG-CGCUacGAGGACGUGGCGCGGg-- -3'
miRNA:   3'- -UGCuGCGG--UUCCUGCACCGCGCCgag -5'
6370 5' -60.4 NC_001847.1 + 33563 0.78 0.144804
Target:  5'- gGCGcACGCgGGGGGCGUcuGGCGCGGCcCg -3'
miRNA:   3'- -UGC-UGCGgUUCCUGCA--CCGCGCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 14444 0.78 0.15227
Target:  5'- gACGGCGCCGGGGuGCGcGGcCGCGGcCUCu -3'
miRNA:   3'- -UGCUGCGGUUCC-UGCaCC-GCGCC-GAG- -5'
6370 5' -60.4 NC_001847.1 + 10854 0.77 0.160083
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5'
6370 5' -60.4 NC_001847.1 + 66063 0.77 0.176802
Target:  5'- gGCGGCGCCGGGGGCGacGCG-GGCUUu -3'
miRNA:   3'- -UGCUGCGGUUCCUGCacCGCgCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 130209 0.75 0.214935
Target:  5'- gGCGGCGCgGAGGGCGcgggaaGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGgUUCCUGCac----CGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 54698 0.75 0.214935
Target:  5'- gGCGGCGCCcgcgggGAGGACGacGCGCGGgUCc -3'
miRNA:   3'- -UGCUGCGG------UUCCUGCacCGCGCCgAG- -5'
6370 5' -60.4 NC_001847.1 + 133626 0.75 0.214935
Target:  5'- cGCGcGCGCCGAGGcCGccuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 30813 0.75 0.214935
Target:  5'- cGCGcGCGCCGAGGcCGccuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 35716 0.75 0.220169
Target:  5'- -aGGCGCCGGagcuGGACGUGGCcGCGGUg- -3'
miRNA:   3'- ugCUGCGGUU----CCUGCACCG-CGCCGag -5'
6370 5' -60.4 NC_001847.1 + 92788 0.75 0.224972
Target:  5'- -aGGCGCUggccaccGAGGACGUGGC-CGGCUg -3'
miRNA:   3'- ugCUGCGG-------UUCCUGCACCGcGCCGAg -5'
6370 5' -60.4 NC_001847.1 + 55466 0.75 0.230414
Target:  5'- cCGA-GCCcguauucGAGGAgauCGUGGCGCGGCUCc -3'
miRNA:   3'- uGCUgCGG-------UUCCU---GCACCGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 93217 0.75 0.230964
Target:  5'- uGCGACGgCGAGGGCGagGGCGagGGUUCu -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa-CCGCg-CCGAG- -5'
6370 5' -60.4 NC_001847.1 + 60855 0.75 0.230964
Target:  5'- cGCGGCGCCAGGGcguccaGCGcGGgGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCC------UGCaCCgCGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.