miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 5' -60.4 NC_001847.1 + 76 0.67 0.621778
Target:  5'- gGCGGgGUgGGGGAUG-GGCGCGGa-- -3'
miRNA:   3'- -UGCUgCGgUUCCUGCaCCGCGCCgag -5'
6370 5' -60.4 NC_001847.1 + 542 0.67 0.601747
Target:  5'- cCGACGCgGGGaACGUGGCgGCGGaCg- -3'
miRNA:   3'- uGCUGCGgUUCcUGCACCG-CGCC-Gag -5'
6370 5' -60.4 NC_001847.1 + 1141 0.69 0.503875
Target:  5'- gGCGGCGCCucGGc----GCGCGGCUCc -3'
miRNA:   3'- -UGCUGCGGuuCCugcacCGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 1910 0.67 0.601747
Target:  5'- uACGAUGC--GGGGCagGUGGCGaGGCUUa -3'
miRNA:   3'- -UGCUGCGguUCCUG--CACCGCgCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 3148 0.69 0.532651
Target:  5'- gGCGGCGCCGGcGGCGcGGCG-GGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUcCUGCaCCGCgCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 3255 0.68 0.55216
Target:  5'- cCGGCGgCAGGGGCGccGGCGCcGCg- -3'
miRNA:   3'- uGCUGCgGUUCCUGCa-CCGCGcCGag -5'
6370 5' -60.4 NC_001847.1 + 3865 0.68 0.591761
Target:  5'- gACGGCGCC-GGGGCu--GCGCaGCUCc -3'
miRNA:   3'- -UGCUGCGGuUCCUGcacCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 3893 0.66 0.691726
Target:  5'- cGCGGCGCCGcGGcguagccaGCGcgGGCGcCGGUUg -3'
miRNA:   3'- -UGCUGCGGUuCC--------UGCa-CCGC-GCCGAg -5'
6370 5' -60.4 NC_001847.1 + 3979 0.72 0.341308
Target:  5'- -gGGCGCCGGGGGCcggGcGCGCGGCc- -3'
miRNA:   3'- ugCUGCGGUUCCUGca-C-CGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 4561 0.71 0.422117
Target:  5'- cGCGGCGUgGAaguGGAaGUGGUGCGGgUCg -3'
miRNA:   3'- -UGCUGCGgUU---CCUgCACCGCGCCgAG- -5'
6370 5' -60.4 NC_001847.1 + 4965 0.71 0.422117
Target:  5'- cGCGcGCGCCGGGGGgGcagcuggGGUGCGGCg- -3'
miRNA:   3'- -UGC-UGCGGUUCCUgCa------CCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 5019 0.72 0.364339
Target:  5'- gGCGGCGCgGAGGggaagcucggGCGaccGGCgGCGGCUCc -3'
miRNA:   3'- -UGCUGCGgUUCC----------UGCa--CCG-CGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 5221 0.71 0.422117
Target:  5'- cGCGGCgGCCGgcGGGGCGc-GCGCGGCa- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUGCacCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 6106 0.66 0.661872
Target:  5'- -aGACGCCcgcGAGG-CGcGGCGCGaGCg- -3'
miRNA:   3'- ugCUGCGG---UUCCuGCaCCGCGC-CGag -5'
6370 5' -60.4 NC_001847.1 + 7228 0.66 0.661872
Target:  5'- cAUGGCGCUGcagcggcuggucGGGugGcugugcgGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGU------------UCCugCa------CCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 7376 0.83 0.070302
Target:  5'- cCGGCGCCGcugacaguggAGGACGUGGCGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 7750 0.67 0.601747
Target:  5'- gGCGGCgGCCAGGGcaagcccgACGgccguUGGUGCcgaGGCUCg -3'
miRNA:   3'- -UGCUG-CGGUUCC--------UGC-----ACCGCG---CCGAG- -5'
6370 5' -60.4 NC_001847.1 + 8464 0.71 0.40505
Target:  5'- gGCGGCGCC-GGGcCG-GGgGCGGCg- -3'
miRNA:   3'- -UGCUGCGGuUCCuGCaCCgCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 8700 0.67 0.611755
Target:  5'- gACGAUGCCGAcGGccACGgcuggugGGCGgGGCa- -3'
miRNA:   3'- -UGCUGCGGUU-CC--UGCa------CCGCgCCGag -5'
6370 5' -60.4 NC_001847.1 + 10854 0.77 0.160083
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.