miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6370 5' -60.4 NC_001847.1 + 71945 0.74 0.269776
Target:  5'- aACGGCGCCGcgccgcacguCGUGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUuccu------GCACCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 7376 0.83 0.070302
Target:  5'- cCGGCGCCGcugacaguggAGGACGUGGCGC-GCUCg -3'
miRNA:   3'- uGCUGCGGU----------UCCUGCACCGCGcCGAG- -5'
6370 5' -60.4 NC_001847.1 + 77800 0.82 0.084447
Target:  5'- -gGAUGUCugGAGGACGUGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGG--UUCCUGCACCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 132939 0.75 0.247989
Target:  5'- gGCGGCcuacugccGCCccGAGGuCGcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUG--------CGG--UUCCuGCaCCGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 31190 0.75 0.250337
Target:  5'- cCGACGCCAucGACGgugcucucgcugagGGCGCGGCg- -3'
miRNA:   3'- uGCUGCGGUucCUGCa-------------CCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 42425 0.81 0.093709
Target:  5'- gACGGCGCCGguGGcGGCGaUGGCGCGcGCUCg -3'
miRNA:   3'- -UGCUGCGGU--UC-CUGC-ACCGCGC-CGAG- -5'
6370 5' -60.4 NC_001847.1 + 35716 0.75 0.220169
Target:  5'- -aGGCGCCGGagcuGGACGUGGCcGCGGUg- -3'
miRNA:   3'- ugCUGCGGUU----CCUGCACCG-CGCCGag -5'
6370 5' -60.4 NC_001847.1 + 27524 0.75 0.241058
Target:  5'- gGCGGCGgCGGGGACGcccgagaacggcGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa-----------CCGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 30541 0.74 0.259908
Target:  5'- gACGuCGCCGAGcuCGUcGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUUCcuGCAcCGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 130667 0.73 0.291743
Target:  5'- cCGGCGCCAGGGACGcGG-GgGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCgCgCCGag -5'
6370 5' -60.4 NC_001847.1 + 73717 0.66 0.711404
Target:  5'- gGCGGCgcgGCCGcGGGCGUcgagGGC-CGGCUg -3'
miRNA:   3'- -UGCUG---CGGUuCCUGCA----CCGcGCCGAg -5'
6370 5' -60.4 NC_001847.1 + 66063 0.77 0.176802
Target:  5'- gGCGGCGCCGGGGGCGacGCG-GGCUUu -3'
miRNA:   3'- -UGCUGCGGUUCCUGCacCGCgCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 10854 0.77 0.160083
Target:  5'- cGCGugGCCGAGGcGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- -UGCugCGGUUCC-UGCa--CCGCG-CCGag -5'
6370 5' -60.4 NC_001847.1 + 35103 0.74 0.259908
Target:  5'- uACGACGCCGuaacguaccuggAGGGCGaccUGGCGgccgugccuCGGCUCg -3'
miRNA:   3'- -UGCUGCGGU------------UCCUGC---ACCGC---------GCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 54498 0.74 0.259908
Target:  5'- gGCGGCGCCGgggccgggguggGGGGCGguggGGCGgGGC-Cg -3'
miRNA:   3'- -UGCUGCGGU------------UCCUGCa---CCGCgCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 133626 0.75 0.214935
Target:  5'- cGCGcGCGCCGAGGcCGccuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
6370 5' -60.4 NC_001847.1 + 117867 0.73 0.291743
Target:  5'- gACGACGCCAccGGCGacugGGCcuGCGGCUg -3'
miRNA:   3'- -UGCUGCGGUucCUGCa---CCG--CGCCGAg -5'
6370 5' -60.4 NC_001847.1 + 133128 0.73 0.291743
Target:  5'- -gGACcCCGAGGACGUGcGCGUGGUg- -3'
miRNA:   3'- ugCUGcGGUUCCUGCAC-CGCGCCGag -5'
6370 5' -60.4 NC_001847.1 + 60855 0.75 0.230964
Target:  5'- cGCGGCGCCAGGGcguccaGCGcGGgGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCC------UGCaCCgCGCCGaG- -5'
6370 5' -60.4 NC_001847.1 + 88893 0.74 0.254488
Target:  5'- gGCGGCucccGCCGGGGGCGgcucccuugcgcgcGCGCGGCUCu -3'
miRNA:   3'- -UGCUG----CGGUUCCUGCac------------CGCGCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.