miRNA display CGI


Results 1 - 20 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 135141 0.68 0.553249
Target:  5'- --cGCGCC-CCCcGCGCGgggGCUgGGCc -3'
miRNA:   3'- ucaUGCGGuGGGaCGCGCg--CGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 134855 0.8 0.100434
Target:  5'- gGGgACGgCGCCC-GCGCGgGCUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134373 0.68 0.524276
Target:  5'- gAGgccgGCGCCGCCg-GCgGCGgGC-CGGCc -3'
miRNA:   3'- -UCa---UGCGGUGGgaCG-CGCgCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134202 0.71 0.3435
Target:  5'- cAGU-CGUC-CCCggGCGCGgGCUCGGg -3'
miRNA:   3'- -UCAuGCGGuGGGa-CGCGCgCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 134172 0.68 0.543533
Target:  5'- cGGgccgGCGCauagaCGCCCgGCGCaGCGUggagCGGCg -3'
miRNA:   3'- -UCa---UGCG-----GUGGGaCGCG-CGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 134048 0.76 0.187966
Target:  5'- --gGCGCCGCCCgcgGcCGCgGCGCcCGGCg -3'
miRNA:   3'- ucaUGCGGUGGGa--C-GCG-CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133978 0.67 0.592567
Target:  5'- --gGCGCCGgggCUgggaGCGCGCGCggcaUCGGCa -3'
miRNA:   3'- ucaUGCGGUg--GGa---CGCGCGCG----AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133915 0.67 0.592567
Target:  5'- uGUACcugGCCugCgggcgGCGCGCGCUggagcUGGCg -3'
miRNA:   3'- uCAUG---CGGugGga---CGCGCGCGA-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 133872 0.7 0.415443
Target:  5'- --cGCGCCGCCaaccGCuGgGgGCUCGGCg -3'
miRNA:   3'- ucaUGCGGUGGga--CG-CgCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133747 0.66 0.652221
Target:  5'- ---gUGCCugCCUGUGuUGUcggggcaagucgGCUCGGCg -3'
miRNA:   3'- ucauGCGGugGGACGC-GCG------------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133745 0.69 0.476457
Target:  5'- cGUGcCGCCGCgcgaguaCCggcaGCGCGUGCUgcCGGCg -3'
miRNA:   3'- uCAU-GCGGUG-------GGa---CGCGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 133665 0.7 0.431772
Target:  5'- --gGCGCCGCCgCUGCGgcucugcCGCGg-CGGCa -3'
miRNA:   3'- ucaUGCGGUGG-GACGC-------GCGCgaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133582 0.66 0.662153
Target:  5'- --cGCGCCgugcugGCCUcGCgGCGCGUcuUCGGCc -3'
miRNA:   3'- ucaUGCGG------UGGGaCG-CGCGCG--AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133545 0.75 0.207069
Target:  5'- cAGUGCGCCgcgcgcugGCCCgaGCgGCGCGCU-GGCg -3'
miRNA:   3'- -UCAUGCGG--------UGGGa-CG-CGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 133396 0.66 0.631323
Target:  5'- --gGCGCgguggagUACCuCUGCGCGCGgCUggccgCGGCg -3'
miRNA:   3'- ucaUGCG-------GUGG-GACGCGCGC-GA-----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 133323 0.74 0.233285
Target:  5'- gGGcGCGCCGgaCgUGaGCGCGCUCGGCg -3'
miRNA:   3'- -UCaUGCGGUg-GgACgCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133222 0.67 0.602481
Target:  5'- gAGUGgcCGCCGCgCCgcgGCGggcucucgcaCGCGCUcgCGGCg -3'
miRNA:   3'- -UCAU--GCGGUG-GGa--CGC----------GCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 133188 0.76 0.187966
Target:  5'- --gGCGCCGCCCgGCGaggacgaGCGC-CGGCg -3'
miRNA:   3'- ucaUGCGGUGGGaCGCg------CGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 133167 0.69 0.441395
Target:  5'- -cUGCGCUGCuaCCUGCGCGgGCgcgGGCu -3'
miRNA:   3'- ucAUGCGGUG--GGACGCGCgCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 133084 0.69 0.495901
Target:  5'- ---cCGCCACCgCUGCgGCGgCGCgUGGCc -3'
miRNA:   3'- ucauGCGGUGG-GACG-CGC-GCGaGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.