miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 132306 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131650 0.66 0.933439
Target:  5'- -aGCuCGCGCGgCUCAUgugCgAGCUCu -3'
miRNA:   3'- gaCGcGCGCGUgGAGUAaa-GgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 131418 0.68 0.868874
Target:  5'- -cGCGUGCGCGCCgugg--CCGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 131165 0.66 0.938505
Target:  5'- -cGCGCugGCGCugCUCAcggcCCAcCUCg -3'
miRNA:   3'- gaCGCG--CGCGugGAGUaaa-GGUuGAG- -5'
6377 5' -53.5 NC_001847.1 + 130864 0.73 0.604734
Target:  5'- -cGCcgGCGCGCGCCUCGUggccgccaaagCCGACUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUAaa---------GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 130338 0.69 0.827808
Target:  5'- -gGCauCGCGCGCCUCG--UCCAGCa- -3'
miRNA:   3'- gaCGc-GCGCGUGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 129273 0.68 0.883754
Target:  5'- cCUGCGCGCaGCgcuggaccACCUCGagggCCAggcgGCUCg -3'
miRNA:   3'- -GACGCGCG-CG--------UGGAGUaaa-GGU----UGAG- -5'
6377 5' -53.5 NC_001847.1 + 129103 0.7 0.800819
Target:  5'- gUGCGCGCGCAgUUUAacgUCCAaaGCUa -3'
miRNA:   3'- gACGCGCGCGUgGAGUaa-AGGU--UGAg -5'
6377 5' -53.5 NC_001847.1 + 128455 0.77 0.408329
Target:  5'- cCUGCGCGCGCGCC-CGg--CCGGC-Cg -3'
miRNA:   3'- -GACGCGCGCGUGGaGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 128247 0.72 0.670325
Target:  5'- -gGCGCGCGCGCgCUCg---CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUG-GAGuaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 127089 0.67 0.910615
Target:  5'- uCUGCGCGCGgGCCgcgCGgcuuugggUCCAccggGCUg -3'
miRNA:   3'- -GACGCGCGCgUGGa--GUaa------AGGU----UGAg -5'
6377 5' -53.5 NC_001847.1 + 124386 0.68 0.883754
Target:  5'- -cGCGCGCGCAgCUCug--CCAGa-- -3'
miRNA:   3'- gaCGCGCGCGUgGAGuaaaGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 122926 0.68 0.883754
Target:  5'- gUGUGCGCGCGCCgcgCAag-CCAGaagCg -3'
miRNA:   3'- gACGCGCGCGUGGa--GUaaaGGUUga-G- -5'
6377 5' -53.5 NC_001847.1 + 122703 0.66 0.952187
Target:  5'- -cGCGCGCGCugugccggcGCCUUGgagcCCGcACUCa -3'
miRNA:   3'- gaCGCGCGCG---------UGGAGUaaa-GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 121121 0.67 0.914904
Target:  5'- aCUGCGCGCuGCGCCgccgccugcugCCGuGCUCu -3'
miRNA:   3'- -GACGCGCG-CGUGGaguaaa-----GGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 120741 0.7 0.809991
Target:  5'- gCUGCGaGCgGgGCCUCGcg-CCAGCUCg -3'
miRNA:   3'- -GACGCgCG-CgUGGAGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 119681 0.69 0.83983
Target:  5'- uCUGCGCGCcguGCGCCgccacgcuuuucagCAgcgCCAGCUUa -3'
miRNA:   3'- -GACGCGCG---CGUGGa-------------GUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 119605 0.74 0.564813
Target:  5'- -cGCGCGCGCACCggcg--CCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 118688 0.66 0.932918
Target:  5'- uCUGCGcCGCGgGCCUCGUcguaguuUUCguAgUCg -3'
miRNA:   3'- -GACGC-GCGCgUGGAGUA-------AAGguUgAG- -5'
6377 5' -53.5 NC_001847.1 + 118108 0.66 0.952187
Target:  5'- gCUGCGCGUGUACUUCGagggCGGCg- -3'
miRNA:   3'- -GACGCGCGCGUGGAGUaaagGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.