miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 104307 0.66 0.576064
Target:  5'- cGGCGGCGCCUCgGgguagagccgcGCGUaGGCGgccuCGGc -3'
miRNA:   3'- -CCGCUGCGGAGgU-----------CGCAcCCGC----GCCa -5'
6378 5' -63.6 NC_001847.1 + 120988 0.66 0.547269
Target:  5'- cGGcCGuCGCC-CUAGCGgccgcccaGGCGCGGg -3'
miRNA:   3'- -CC-GCuGCGGaGGUCGCac------CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 54697 0.66 0.547269
Target:  5'- cGGCGGCGCC-CgCGGgGaGGacgacGCGCGGg -3'
miRNA:   3'- -CCGCUGCGGaG-GUCgCaCC-----CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 23425 0.66 0.547269
Target:  5'- cGGCGGgGCgUCCGGgGUcgucggcgGGGCGUccGGg -3'
miRNA:   3'- -CCGCUgCGgAGGUCgCA--------CCCGCG--CCa -5'
6378 5' -63.6 NC_001847.1 + 108742 0.66 0.546317
Target:  5'- uGCGACGCgacggcgUUCCugccGCGcUGGGCGcCGGa -3'
miRNA:   3'- cCGCUGCG-------GAGGu---CGC-ACCCGC-GCCa -5'
6378 5' -63.6 NC_001847.1 + 99504 0.66 0.544414
Target:  5'- aGGCGGCGCggUCCAGCGcUGgccccagcgccgccGGCgGCGGc -3'
miRNA:   3'- -CCGCUGCGg-AGGUCGC-AC--------------CCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 119150 0.66 0.537769
Target:  5'- cGuCGGCGCCgcggCCGccGCG-GGGCgGCGGg -3'
miRNA:   3'- cC-GCUGCGGa---GGU--CGCaCCCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 102987 0.66 0.537769
Target:  5'- cGCGcACGCCgUCgCGGCGU--GCGCGGg -3'
miRNA:   3'- cCGC-UGCGG-AG-GUCGCAccCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 95093 0.66 0.537769
Target:  5'- uGGCGugGCggggGGCGcgauuggGGGCGCGGa -3'
miRNA:   3'- -CCGCugCGgaggUCGCa------CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 119080 0.66 0.556822
Target:  5'- aGGCGcccagcagagGCGCCgcggCCGccGCG-GGGCgGCGGg -3'
miRNA:   3'- -CCGC----------UGCGGa---GGU--CGCaCCCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 98564 0.66 0.56546
Target:  5'- cGGCG-UGCCgUCGGCGUccagguaGGcGCGCGGc -3'
miRNA:   3'- -CCGCuGCGGaGGUCGCA-------CC-CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 124695 0.66 0.566422
Target:  5'- aGCaACGCggCCAGgGgagccGGGCGCGGg -3'
miRNA:   3'- cCGcUGCGgaGGUCgCa----CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 79691 0.66 0.576064
Target:  5'- cGGCGcGCGCCccgCCGGCGccaGGCGCu-- -3'
miRNA:   3'- -CCGC-UGCGGa--GGUCGCac-CCGCGcca -5'
6378 5' -63.6 NC_001847.1 + 49508 0.66 0.576064
Target:  5'- cGGCGcCGCUUC--GCc-GGGCGCGGg -3'
miRNA:   3'- -CCGCuGCGGAGguCGcaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 12285 0.66 0.574133
Target:  5'- aGCG-CGCCcaCCAGCaccacaagccaGGGCGCGGg -3'
miRNA:   3'- cCGCuGCGGa-GGUCGca---------CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 35964 0.66 0.572203
Target:  5'- uGGCGGCGCUgcuguggcucccgCCGGC-UGGcgccacaaggcGCGCGGa -3'
miRNA:   3'- -CCGCUGCGGa------------GGUCGcACC-----------CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 12674 0.66 0.566422
Target:  5'- cGGCGACGCgaagCUgCAcugcGCGUcGGCGgGGUg -3'
miRNA:   3'- -CCGCUGCG----GAgGU----CGCAcCCGCgCCA- -5'
6378 5' -63.6 NC_001847.1 + 132142 0.66 0.566422
Target:  5'- gGGCGGCGCUgcugCC-GCGcaGGGUGgGGc -3'
miRNA:   3'- -CCGCUGCGGa---GGuCGCa-CCCGCgCCa -5'
6378 5' -63.6 NC_001847.1 + 42321 0.66 0.566422
Target:  5'- gGGCGAgUGUUUCguGCuGUGGGCGCc-- -3'
miRNA:   3'- -CCGCU-GCGGAGguCG-CACCCGCGcca -5'
6378 5' -63.6 NC_001847.1 + 2296 0.66 0.566422
Target:  5'- cGGCGGgGCCgCCgGGCGgcaUGGGCcccagcacGCGGg -3'
miRNA:   3'- -CCGCUgCGGaGG-UCGC---ACCCG--------CGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.