miRNA display CGI


Results 1 - 20 of 373 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 74162 0.84 0.03483
Target:  5'- uGGCGGCGCCUCuCGGCGUGGggcccaugccGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGAG-GUCGCACC----------CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 59329 0.74 0.189461
Target:  5'- cGGCGGCGCCguaCCAGCccggcaucGGGgGCGGa -3'
miRNA:   3'- -CCGCUGCGGa--GGUCGca------CCCgCGCCa -5'
6378 5' -63.6 NC_001847.1 + 117865 0.74 0.19403
Target:  5'- aGGaCGACGCCaCCGGCGacUGGGCcuGCGGc -3'
miRNA:   3'- -CC-GCUGCGGaGGUCGC--ACCCG--CGCCa -5'
6378 5' -63.6 NC_001847.1 + 104307 0.66 0.576064
Target:  5'- cGGCGGCGCCUCgGgguagagccgcGCGUaGGCGgccuCGGc -3'
miRNA:   3'- -CCGCUGCGGAGgU-----------CGCAcCCGC----GCCa -5'
6378 5' -63.6 NC_001847.1 + 134824 0.78 0.095041
Target:  5'- gGGCGugGagcgcgaagCUCCGGCG-GGGCGCGGg -3'
miRNA:   3'- -CCGCugCg--------GAGGUCGCaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 8102 0.78 0.102504
Target:  5'- cGGCGACGCggcgCCAGCGcaGGCGCGGg -3'
miRNA:   3'- -CCGCUGCGga--GGUCGCacCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 81029 0.77 0.10969
Target:  5'- gGGCGACGCCgCCGcggacugcgggggcGaCGUGGGCGUGGg -3'
miRNA:   3'- -CCGCUGCGGaGGU--------------C-GCACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 105024 0.77 0.116181
Target:  5'- gGGCGGCaguagGCCgCCAGCGccgcggcgcUGGGCGCGGg -3'
miRNA:   3'- -CCGCUG-----CGGaGGUCGC---------ACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 30051 0.76 0.138201
Target:  5'- gGGCGACGUUgCCGGCGcgGuGGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGaGGUCGCa-C-CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 43282 0.74 0.189461
Target:  5'- uGCGACGCCgcgCguGCGcGGGCuGCGGa -3'
miRNA:   3'- cCGCUGCGGa--GguCGCaCCCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 94153 0.75 0.163992
Target:  5'- gGGCGACaUCUCgCGGCGgcugcUGGGCGCGGc -3'
miRNA:   3'- -CCGCUGcGGAG-GUCGC-----ACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 104076 0.76 0.12833
Target:  5'- cGGCG-CGCCgagcccCCAGCGguugGcGGCGCGGUg -3'
miRNA:   3'- -CCGCuGCGGa-----GGUCGCa---C-CCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 54497 0.81 0.057026
Target:  5'- cGGCGGCGCCggggCCGGgGUgGGGgGCGGUg -3'
miRNA:   3'- -CCGCUGCGGa---GGUCgCA-CCCgCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 43581 0.75 0.168012
Target:  5'- gGGCGACGCgCgccCCAGCGUGG-CGCuGGg -3'
miRNA:   3'- -CCGCUGCG-Ga--GGUCGCACCcGCG-CCa -5'
6378 5' -63.6 NC_001847.1 + 66323 0.8 0.068269
Target:  5'- cGCGGCGcCCUgCGGCGggugGGGCGCGGg -3'
miRNA:   3'- cCGCUGC-GGAgGUCGCa---CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 33136 0.77 0.125187
Target:  5'- cGGCGAgCGCUUCC-GCGUGGcgaGCGCGGc -3'
miRNA:   3'- -CCGCU-GCGGAGGuCGCACC---CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 74462 0.74 0.179741
Target:  5'- aGGUGACGCCggacgugcugugCC-GCGaGGGCGCGGa -3'
miRNA:   3'- -CCGCUGCGGa-----------GGuCGCaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 125002 0.74 0.189461
Target:  5'- gGGCGagagcugcagcaGCGCCUcCCAGCacgcguccGUGGGCGUGGc -3'
miRNA:   3'- -CCGC------------UGCGGA-GGUCG--------CACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 106706 0.78 0.092669
Target:  5'- cGCGGCGCCgcggcguagCCAGCGcGGGCGcCGGUu -3'
miRNA:   3'- cCGCUGCGGa--------GGUCGCaCCCGC-GCCA- -5'
6378 5' -63.6 NC_001847.1 + 106771 0.78 0.102504
Target:  5'- gGGCGcCGUCUCCGGCGcgaGGGCGcCGGg -3'
miRNA:   3'- -CCGCuGCGGAGGUCGCa--CCCGC-GCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.