miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 1 0.68 0.429426
Target:  5'- GGCccaGCCcCCGcGCGggGGGCGCGGa -3'
miRNA:   3'- CCGcugCGGaGGU-CGCa-CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 49 0.68 0.455367
Target:  5'- cGCGGCGCgugcaUUgCGGCGggcggGGGCGgGGUg -3'
miRNA:   3'- cCGCUGCG-----GAgGUCGCa----CCCGCgCCA- -5'
6378 5' -63.6 NC_001847.1 + 443 0.66 0.528327
Target:  5'- cGGCGGCGgCagCAGCG-GcGGCgGCGGc -3'
miRNA:   3'- -CCGCUGCgGagGUCGCaC-CCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 473 0.68 0.446624
Target:  5'- cGGCGGCGgCagCAGCG-GcGGCgGCGGg -3'
miRNA:   3'- -CCGCUGCgGagGUCGCaC-CCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 560 0.67 0.509632
Target:  5'- cGGCGgacgccagcgccGCGUCUCCGGCGccGGGUccuggcccuccGCGGc -3'
miRNA:   3'- -CCGC------------UGCGGAGGUCGCa-CCCG-----------CGCCa -5'
6378 5' -63.6 NC_001847.1 + 1140 0.72 0.250904
Target:  5'- cGGCGGCGCCUCgGcGCGcGGcuccggcaGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGAGgU-CGCaCC--------CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 1263 0.76 0.12833
Target:  5'- cGGCG-CGCCgagcccCCAGCGguugGcGGCGCGGUg -3'
miRNA:   3'- -CCGCuGCGGa-----GGUCGCa---C-CCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 1494 0.66 0.576064
Target:  5'- cGGCGGCGCCUCgGgguagagccgcGCGUaGGCGgccuCGGc -3'
miRNA:   3'- -CCGCUGCGGAGgU-----------CGCAcCCGC----GCCa -5'
6378 5' -63.6 NC_001847.1 + 1926 0.66 0.547269
Target:  5'- uGGCGAgGCUuagCCGGCGcGcGGCGCa-- -3'
miRNA:   3'- -CCGCUgCGGa--GGUCGCaC-CCGCGcca -5'
6378 5' -63.6 NC_001847.1 + 1971 0.74 0.184987
Target:  5'- gGGCGGCGCCgCCAGCGccuccccGGCaGCGGg -3'
miRNA:   3'- -CCGCUGCGGaGGUCGCac-----CCG-CGCCa -5'
6378 5' -63.6 NC_001847.1 + 2081 0.66 0.537769
Target:  5'- cGGCGAgCGCC-CC-GCG-GGGCccgcGCGGc -3'
miRNA:   3'- -CCGCU-GCGGaGGuCGCaCCCG----CGCCa -5'
6378 5' -63.6 NC_001847.1 + 2146 0.67 0.4642
Target:  5'- aGGCGAgCGCCgggcgCCAGgGcucgGGGaagaGCGGg -3'
miRNA:   3'- -CCGCU-GCGGa----GGUCgCa---CCCg---CGCCa -5'
6378 5' -63.6 NC_001847.1 + 2211 0.77 0.116181
Target:  5'- gGGCGGCaguagGCCgCCAGCGccgcggcgcUGGGCGCGGg -3'
miRNA:   3'- -CCGCUG-----CGGaGGUCGC---------ACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 2296 0.66 0.566422
Target:  5'- cGGCGGgGCCgCCgGGCGgcaUGGGCcccagcacGCGGg -3'
miRNA:   3'- -CCGCUgCGGaGG-UCGC---ACCCG--------CGCCa -5'
6378 5' -63.6 NC_001847.1 + 2558 0.69 0.380268
Target:  5'- cGGCGGgcUGUCUUCGGCGcGGGCGCc-- -3'
miRNA:   3'- -CCGCU--GCGGAGGUCGCaCCCGCGcca -5'
6378 5' -63.6 NC_001847.1 + 2655 0.66 0.566422
Target:  5'- uGCGGCGCCUucgcCCGGCGgcucGGC-CGGc -3'
miRNA:   3'- cCGCUGCGGA----GGUCGCac--CCGcGCCa -5'
6378 5' -63.6 NC_001847.1 + 2761 0.67 0.513349
Target:  5'- cGGCGGCGCCggcgCCGGCGcccccgccggcGGccuccagggccgcgaGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGa---GGUCGCa----------CC---------------CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 2942 0.69 0.380268
Target:  5'- cGCGGcCGCCUCCAGCGcGgcggccgccucGGCGCGc- -3'
miRNA:   3'- cCGCU-GCGGAGGUCGCaC-----------CCGCGCca -5'
6378 5' -63.6 NC_001847.1 + 3164 0.71 0.307107
Target:  5'- cGGCGGgcCGCCUCCAGCGccucgcggcaGGCGaCGGc -3'
miRNA:   3'- -CCGCU--GCGGAGGUCGCac--------CCGC-GCCa -5'
6378 5' -63.6 NC_001847.1 + 3233 0.67 0.49122
Target:  5'- cGCGccgcccGCGCCgugcucgCCGGCGgcagGGGCGcCGGc -3'
miRNA:   3'- cCGC------UGCGGa------GGUCGCa---CCCGC-GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.