miRNA display CGI


Results 1 - 20 of 373 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6378 5' -63.6 NC_001847.1 + 108057 1.09 0.000563
Target:  5'- cGGCGACGCCUCCAGCGUGGGCGCGGUg -3'
miRNA:   3'- -CCGCUGCGGAGGUCGCACCCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 74162 0.84 0.03483
Target:  5'- uGGCGGCGCCUCuCGGCGUGGggcccaugccGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGAG-GUCGCACC----------CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 54497 0.81 0.057026
Target:  5'- cGGCGGCGCCggggCCGGgGUgGGGgGCGGUg -3'
miRNA:   3'- -CCGCUGCGGa---GGUCgCA-CCCgCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 66323 0.8 0.068269
Target:  5'- cGCGGCGcCCUgCGGCGggugGGGCGCGGg -3'
miRNA:   3'- cCGCUGC-GGAgGUCGCa---CCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 3958 0.79 0.085887
Target:  5'- gGGCGcCGUCUCCGGCGgcgaGGGCGcCGGg -3'
miRNA:   3'- -CCGCuGCGGAGGUCGCa---CCCGC-GCCa -5'
6378 5' -63.6 NC_001847.1 + 106706 0.78 0.092669
Target:  5'- cGCGGCGCCgcggcguagCCAGCGcGGGCGcCGGUu -3'
miRNA:   3'- cCGCUGCGGa--------GGUCGCaCCCGC-GCCA- -5'
6378 5' -63.6 NC_001847.1 + 3893 0.78 0.092669
Target:  5'- cGCGGCGCCgcggcguagCCAGCGcGGGCGcCGGUu -3'
miRNA:   3'- cCGCUGCGGa--------GGUCGCaCCCGC-GCCA- -5'
6378 5' -63.6 NC_001847.1 + 134824 0.78 0.095041
Target:  5'- gGGCGugGagcgcgaagCUCCGGCG-GGGCGCGGg -3'
miRNA:   3'- -CCGCugCg--------GAGGUCGCaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 32011 0.78 0.095041
Target:  5'- gGGCGugGagcgcgaagCUCCGGCG-GGGCGCGGg -3'
miRNA:   3'- -CCGCugCg--------GAGGUCGCaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 8102 0.78 0.102504
Target:  5'- cGGCGACGCggcgCCAGCGcaGGCGCGGg -3'
miRNA:   3'- -CCGCUGCGga--GGUCGCacCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 106771 0.78 0.102504
Target:  5'- gGGCGcCGUCUCCGGCGcgaGGGCGcCGGg -3'
miRNA:   3'- -CCGCuGCGGAGGUCGCa--CCCGC-GCCa -5'
6378 5' -63.6 NC_001847.1 + 66684 0.77 0.107783
Target:  5'- cGGCGGgGCC-CCGGcCGcGGGCGCGGa -3'
miRNA:   3'- -CCGCUgCGGaGGUC-GCaCCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 81029 0.77 0.10969
Target:  5'- gGGCGACGCCgCCGcggacugcgggggcGaCGUGGGCGUGGg -3'
miRNA:   3'- -CCGCUGCGGaGGU--------------C-GCACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 2211 0.77 0.116181
Target:  5'- gGGCGGCaguagGCCgCCAGCGccgcggcgcUGGGCGCGGg -3'
miRNA:   3'- -CCGCUG-----CGGaGGUCGC---------ACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 105024 0.77 0.116181
Target:  5'- gGGCGGCaguagGCCgCCAGCGccgcggcgcUGGGCGCGGg -3'
miRNA:   3'- -CCGCUG-----CGGaGGUCGC---------ACCCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 33136 0.77 0.125187
Target:  5'- cGGCGAgCGCUUCC-GCGUGGcgaGCGCGGc -3'
miRNA:   3'- -CCGCU-GCGGAGGuCGCACC---CGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 104076 0.76 0.12833
Target:  5'- cGGCG-CGCCgagcccCCAGCGguugGcGGCGCGGUg -3'
miRNA:   3'- -CCGCuGCGGa-----GGUCGCa---C-CCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 1263 0.76 0.12833
Target:  5'- cGGCG-CGCCgagcccCCAGCGguugGcGGCGCGGUg -3'
miRNA:   3'- -CCGCuGCGGa-----GGUCGCa---C-CCGCGCCA- -5'
6378 5' -63.6 NC_001847.1 + 30051 0.76 0.138201
Target:  5'- gGGCGACGUUgCCGGCGcgGuGGCGCGGc -3'
miRNA:   3'- -CCGCUGCGGaGGUCGCa-C-CCGCGCCa -5'
6378 5' -63.6 NC_001847.1 + 67838 0.75 0.160059
Target:  5'- cGGCGGgGCUgCCGGCGcUGGcGCGCGGc -3'
miRNA:   3'- -CCGCUgCGGaGGUCGC-ACC-CGCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.