Results 1 - 20 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6379 | 3' | -51.5 | NC_001847.1 | + | 96183 | 0.66 | 0.99042 |
Target: 5'- -cCGcggCCGCCGCC--AUGGCGCUCg -3' miRNA: 3'- gaGCuuaGGCGGUGGgaUAUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 82732 | 0.66 | 0.99042 |
Target: 5'- gCUCGAcagcgCgCGCCGCCCgcgcuggAGCGCUUg -3' miRNA: 3'- -GAGCUua---G-GCGGUGGGaua----UUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 60482 | 0.66 | 0.99042 |
Target: 5'- -aUGGcgCCGCCGCUUUGUGcGCGCgCg -3' miRNA: 3'- gaGCUuaGGCGGUGGGAUAU-UGUGgG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 25011 | 0.66 | 0.99042 |
Target: 5'- aUCGAGUCCagcagcuucagcGCC-CCC-AUGAUGCCa -3' miRNA: 3'- gAGCUUAGG------------CGGuGGGaUAUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 55571 | 0.66 | 0.99042 |
Target: 5'- -cCGAAgaggCCGCgaGCCCg---GCGCCCc -3' miRNA: 3'- gaGCUUa---GGCGg-UGGGauauUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 129260 | 0.66 | 0.99042 |
Target: 5'- -aCGGcgCgGCCGCCCUGcgcgcAGCGCUg -3' miRNA: 3'- gaGCUuaGgCGGUGGGAUa----UUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 61003 | 0.66 | 0.99042 |
Target: 5'- gUCGAggCCGCCAUC----GGCGCCg -3' miRNA: 3'- gAGCUuaGGCGGUGGgauaUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 77031 | 0.66 | 0.99042 |
Target: 5'- gCUC--AUCCGCCGCgCCgcagaaGUAguagcggcgcgGCACCCg -3' miRNA: 3'- -GAGcuUAGGCGGUG-GGa-----UAU-----------UGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 79411 | 0.66 | 0.99042 |
Target: 5'- -gCGAG-CCGgaCCACC--GUGGCGCCCg -3' miRNA: 3'- gaGCUUaGGC--GGUGGgaUAUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 66926 | 0.66 | 0.99042 |
Target: 5'- -gCGGccccgCCGCgGCCCgu--GCGCCCc -3' miRNA: 3'- gaGCUua---GGCGgUGGGauauUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 119567 | 0.66 | 0.99003 |
Target: 5'- -aCGAG-CCGCCGCCUgccgccgAUGGggguucccccgcgcCACCCg -3' miRNA: 3'- gaGCUUaGGCGGUGGGa------UAUU--------------GUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 125646 | 0.66 | 0.99003 |
Target: 5'- gCUCGggUCCGCUcgucgcggcgcgcaGCUCUucguauacGUGGuCAUCCg -3' miRNA: 3'- -GAGCuuAGGCGG--------------UGGGA--------UAUU-GUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 82398 | 0.66 | 0.989073 |
Target: 5'- -gCGGG-CCGCUugUCcggGACGCCCa -3' miRNA: 3'- gaGCUUaGGCGGugGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 8944 | 0.66 | 0.989073 |
Target: 5'- -gUGAGcUCCGcCCACCCagccccCACCCu -3' miRNA: 3'- gaGCUU-AGGC-GGUGGGauauu-GUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 12276 | 0.66 | 0.989073 |
Target: 5'- -gCGAGUCCaaGCgCGCCCaccAGCACCa -3' miRNA: 3'- gaGCUUAGG--CG-GUGGGauaUUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 78103 | 0.66 | 0.989073 |
Target: 5'- gCUCG-AUCCGCC-UCUUGgacgcgGGCGCCa -3' miRNA: 3'- -GAGCuUAGGCGGuGGGAUa-----UUGUGGg -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 51673 | 0.66 | 0.989073 |
Target: 5'- -aCGGGaagCCGCCcgggaGCCC---GACGCCCa -3' miRNA: 3'- gaGCUUa--GGCGG-----UGGGauaUUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 48596 | 0.66 | 0.989073 |
Target: 5'- cCUCGGcGUCCcccuuaagccgcGCCGCCagcacgcgGGCGCCCa -3' miRNA: 3'- -GAGCU-UAGG------------CGGUGGgaua----UUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 122439 | 0.66 | 0.989073 |
Target: 5'- -cCGAGgcaCCgGCCugCCU---GCACCCc -3' miRNA: 3'- gaGCUUa--GG-CGGugGGAuauUGUGGG- -5' |
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6379 | 3' | -51.5 | NC_001847.1 | + | 26367 | 0.66 | 0.988787 |
Target: 5'- -cCGggUggGCCGCCCggcagcguccGGCGCCCa -3' miRNA: 3'- gaGCuuAggCGGUGGGaua-------UUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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