miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 3' -51.5 NC_001847.1 + 129260 0.66 0.99042
Target:  5'- -aCGGcgCgGCCGCCCUGcgcgcAGCGCUg -3'
miRNA:   3'- gaGCUuaGgCGGUGGGAUa----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 60482 0.66 0.99042
Target:  5'- -aUGGcgCCGCCGCUUUGUGcGCGCgCg -3'
miRNA:   3'- gaGCUuaGGCGGUGGGAUAU-UGUGgG- -5'
6379 3' -51.5 NC_001847.1 + 61003 0.66 0.99042
Target:  5'- gUCGAggCCGCCAUC----GGCGCCg -3'
miRNA:   3'- gAGCUuaGGCGGUGGgauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 77031 0.66 0.99042
Target:  5'- gCUC--AUCCGCCGCgCCgcagaaGUAguagcggcgcgGCACCCg -3'
miRNA:   3'- -GAGcuUAGGCGGUG-GGa-----UAU-----------UGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 82732 0.66 0.99042
Target:  5'- gCUCGAcagcgCgCGCCGCCCgcgcuggAGCGCUUg -3'
miRNA:   3'- -GAGCUua---G-GCGGUGGGaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 25011 0.66 0.99042
Target:  5'- aUCGAGUCCagcagcuucagcGCC-CCC-AUGAUGCCa -3'
miRNA:   3'- gAGCUUAGG------------CGGuGGGaUAUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 55571 0.66 0.99042
Target:  5'- -cCGAAgaggCCGCgaGCCCg---GCGCCCc -3'
miRNA:   3'- gaGCUUa---GGCGg-UGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 96183 0.66 0.99042
Target:  5'- -cCGcggCCGCCGCC--AUGGCGCUCg -3'
miRNA:   3'- gaGCuuaGGCGGUGGgaUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 66926 0.66 0.99042
Target:  5'- -gCGGccccgCCGCgGCCCgu--GCGCCCc -3'
miRNA:   3'- gaGCUua---GGCGgUGGGauauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 79411 0.66 0.99042
Target:  5'- -gCGAG-CCGgaCCACC--GUGGCGCCCg -3'
miRNA:   3'- gaGCUUaGGC--GGUGGgaUAUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 119567 0.66 0.99003
Target:  5'- -aCGAG-CCGCCGCCUgccgccgAUGGggguucccccgcgcCACCCg -3'
miRNA:   3'- gaGCUUaGGCGGUGGGa------UAUU--------------GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 125646 0.66 0.99003
Target:  5'- gCUCGggUCCGCUcgucgcggcgcgcaGCUCUucguauacGUGGuCAUCCg -3'
miRNA:   3'- -GAGCuuAGGCGG--------------UGGGA--------UAUU-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 82398 0.66 0.989073
Target:  5'- -gCGGG-CCGCUugUCcggGACGCCCa -3'
miRNA:   3'- gaGCUUaGGCGGugGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 48596 0.66 0.989073
Target:  5'- cCUCGGcGUCCcccuuaagccgcGCCGCCagcacgcgGGCGCCCa -3'
miRNA:   3'- -GAGCU-UAGG------------CGGUGGgaua----UUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 122439 0.66 0.989073
Target:  5'- -cCGAGgcaCCgGCCugCCU---GCACCCc -3'
miRNA:   3'- gaGCUUa--GG-CGGugGGAuauUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 78103 0.66 0.989073
Target:  5'- gCUCG-AUCCGCC-UCUUGgacgcgGGCGCCa -3'
miRNA:   3'- -GAGCuUAGGCGGuGGGAUa-----UUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 51673 0.66 0.989073
Target:  5'- -aCGGGaagCCGCCcgggaGCCC---GACGCCCa -3'
miRNA:   3'- gaGCUUa--GGCGG-----UGGGauaUUGUGGG- -5'
6379 3' -51.5 NC_001847.1 + 12276 0.66 0.989073
Target:  5'- -gCGAGUCCaaGCgCGCCCaccAGCACCa -3'
miRNA:   3'- gaGCUUAGG--CG-GUGGGauaUUGUGGg -5'
6379 3' -51.5 NC_001847.1 + 8944 0.66 0.989073
Target:  5'- -gUGAGcUCCGcCCACCCagccccCACCCu -3'
miRNA:   3'- gaGCUU-AGGC-GGUGGGauauu-GUGGG- -5'
6379 3' -51.5 NC_001847.1 + 26367 0.66 0.988787
Target:  5'- -cCGggUggGCCGCCCggcagcguccGGCGCCCa -3'
miRNA:   3'- gaGCuuAggCGGUGGGaua-------UUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.