miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
638 3' -62.6 AC_000017.1 + 13667 0.65 0.276974
Target:  5'- aGCGCCgccucuGCCUGCUCGCGCUguugcaacucuaGCaGGGUc -3'
miRNA:   3'- -CGUGG------UGGGCGGGCGCGGa-----------CGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 27566 0.66 0.267441
Target:  5'- -aGCCGCCCGCaagCUGCGCCccugaguuagucaucUGaacuucggcCUGGGCg -3'
miRNA:   3'- cgUGGUGGGCG---GGCGCGG---------------AC---------GAUCCG- -5'
638 3' -62.6 AC_000017.1 + 16808 0.66 0.264766
Target:  5'- cGCuCCACCCGCaCCuacaaGCGCgUGUaugaugAGGUg -3'
miRNA:   3'- -CGuGGUGGGCG-GG-----CGCGgACGa-----UCCG- -5'
638 3' -62.6 AC_000017.1 + 26584 0.66 0.264766
Target:  5'- aGCGCCAaggcuaCCGCUCGUGgC-GC-GGGCa -3'
miRNA:   3'- -CGUGGUg-----GGCGGGCGCgGaCGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 9931 0.66 0.258174
Target:  5'- -gGCCGaCCGCCUGCGCauucaGC-AGGCc -3'
miRNA:   3'- cgUGGUgGGCGGGCGCGga---CGaUCCG- -5'
638 3' -62.6 AC_000017.1 + 13394 0.66 0.245394
Target:  5'- cGCGCgGUCaUGUCCaGCGCCacGCUGGGCg -3'
miRNA:   3'- -CGUGgUGG-GCGGG-CGCGGa-CGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 12434 0.66 0.245394
Target:  5'- gGCGCCAgUCGUCCGUggaguuaagGCCggacgGCU-GGCu -3'
miRNA:   3'- -CGUGGUgGGCGGGCG---------CGGa----CGAuCCG- -5'
638 3' -62.6 AC_000017.1 + 30681 0.67 0.233143
Target:  5'- -aGCUGCCCGCCaaGCGCCaaaaacugcUGCUuauGGUg -3'
miRNA:   3'- cgUGGUGGGCGGg-CGCGG---------ACGAu--CCG- -5'
638 3' -62.6 AC_000017.1 + 16454 0.67 0.227213
Target:  5'- cGCAcCCGCCC-CCCGCGCaa-CUAGauuGCa -3'
miRNA:   3'- -CGU-GGUGGGcGGGCGCGgacGAUC---CG- -5'
638 3' -62.6 AC_000017.1 + 12390 0.67 0.227213
Target:  5'- aGCGCCGCCCGCaCCGCcggGUCcguUGCgucuuGCa -3'
miRNA:   3'- -CGUGGUGGGCG-GGCG---CGG---ACGauc--CG- -5'
638 3' -62.6 AC_000017.1 + 26016 0.67 0.223717
Target:  5'- --cCCGCCCGCCCaaugcggagcuuacCGCCUGCgucauuacccaGGGCc -3'
miRNA:   3'- cguGGUGGGCGGGc-------------GCGGACGa----------UCCG- -5'
638 3' -62.6 AC_000017.1 + 12207 0.67 0.221411
Target:  5'- gGUGgCACCCGCgCGCGCUgGCaacgucGGCg -3'
miRNA:   3'- -CGUgGUGGGCGgGCGCGGaCGau----CCG- -5'
638 3' -62.6 AC_000017.1 + 17746 0.67 0.215736
Target:  5'- gGCAUgGCCgGCCaCG-GCCUGacGGGCg -3'
miRNA:   3'- -CGUGgUGGgCGG-GCgCGGACgaUCCG- -5'
638 3' -62.6 AC_000017.1 + 10820 0.67 0.204759
Target:  5'- -gGCCACUgGCCgCGCGCggcguaagcgGUUAGGCu -3'
miRNA:   3'- cgUGGUGGgCGG-GCGCGga--------CGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 23996 0.68 0.187706
Target:  5'- cCGCCGCCUcCCCGCGCgcccccaaaaaagcgGCUgAGGCg -3'
miRNA:   3'- cGUGGUGGGcGGGCGCGga-------------CGA-UCCG- -5'
638 3' -62.6 AC_000017.1 + 17786 0.68 0.186219
Target:  5'- cGCACCACCggcggcggcgcgcguCGCaCCGuCGCaUGCgcGGCg -3'
miRNA:   3'- -CGUGGUGG---------------GCG-GGC-GCGgACGauCCG- -5'
638 3' -62.6 AC_000017.1 + 16398 0.68 0.179418
Target:  5'- uGCGgCGgCCGCUCGuCGCCUGgacCUGGGg -3'
miRNA:   3'- -CGUgGUgGGCGGGC-GCGGAC---GAUCCg -5'
638 3' -62.6 AC_000017.1 + 15964 0.68 0.179418
Target:  5'- aCGCagGCCCcaGCCUGUGUuaUUGCUGGGCg -3'
miRNA:   3'- cGUGg-UGGG--CGGGCGCG--GACGAUCCG- -5'
638 3' -62.6 AC_000017.1 + 13899 0.69 0.162932
Target:  5'- aGCACagggauguGCCCgGCCCGCGCCcGCccacccgucgucaaAGGCa -3'
miRNA:   3'- -CGUGg-------UGGG-CGGGCGCGGaCGa-------------UCCG- -5'
638 3' -62.6 AC_000017.1 + 33354 0.69 0.161187
Target:  5'- cGCACCGCCCGCagcauaaGaCGCCUuGUccuccGGGCa -3'
miRNA:   3'- -CGUGGUGGGCGgg-----C-GCGGA-CGa----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.