miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6380 3' -53.9 NC_001847.1 + 134893 0.67 0.92174
Target:  5'- cGGgccCCUGGGCGCCGGgCGUcgGGGcgCGa -3'
miRNA:   3'- -CCa--GGGCUUGCGGCCgGUA--CUUuaGC- -5'
6380 3' -53.9 NC_001847.1 + 134206 0.67 0.937432
Target:  5'- nGUcCCCGGGCGCgGGCUcgGGcuUCc -3'
miRNA:   3'- cCA-GGGCUUGCGgCCGGuaCUuuAGc -5'
6380 3' -53.9 NC_001847.1 + 134185 0.69 0.846039
Target:  5'- cGG-CCCGggUGCCGGCgCA----GUCGu -3'
miRNA:   3'- -CCaGGGCuuGCGGCCG-GUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 133026 0.72 0.707183
Target:  5'- --cCCCGAgGCGCUGGCC--GAGAUCGc -3'
miRNA:   3'- ccaGGGCU-UGCGGCCGGuaCUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 132279 0.69 0.883854
Target:  5'- cGG-CCCGcGCGUCGGCC-UGGGcgCu -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGuACUUuaGc -5'
6380 3' -53.9 NC_001847.1 + 130619 0.66 0.946683
Target:  5'- gGGcCaCCGAggGCGCCgaGGCCGaagacgcgGAGAUCGg -3'
miRNA:   3'- -CCaG-GGCU--UGCGG--CCGGUa-------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 125436 0.66 0.954984
Target:  5'- aGGaCCCGcgcGugGCUGGCCGgagGAcgggcgGGUCGg -3'
miRNA:   3'- -CCaGGGC---UugCGGCCGGUa--CU------UUAGC- -5'
6380 3' -53.9 NC_001847.1 + 124591 0.7 0.837857
Target:  5'- cGGgCCCG-GCGCCGGCCGggcgcGGGUCc -3'
miRNA:   3'- -CCaGGGCuUGCGGCCGGUac---UUUAGc -5'
6380 3' -53.9 NC_001847.1 + 120839 0.66 0.965716
Target:  5'- aGGcCCCGAgagGCgGCCGGCCAcGccauuUCGc -3'
miRNA:   3'- -CCaGGGCU---UG-CGGCCGGUaCuuu--AGC- -5'
6380 3' -53.9 NC_001847.1 + 119842 0.7 0.812201
Target:  5'- cGGcCCCcGACGCCGuGCCGgucagcgucGGGAUCGg -3'
miRNA:   3'- -CCaGGGcUUGCGGC-CGGUa--------CUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 116441 0.66 0.950951
Target:  5'- --cCCCGcGGCGCUGGCgGUGAcg-CGg -3'
miRNA:   3'- ccaGGGC-UUGCGGCCGgUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 115876 0.67 0.92174
Target:  5'- aGGUCgCGc-CGCCGGCCA-GAAccgGUCc -3'
miRNA:   3'- -CCAGgGCuuGCGGCCGGUaCUU---UAGc -5'
6380 3' -53.9 NC_001847.1 + 115538 0.67 0.92174
Target:  5'- cGGgCCCGAGCuCgGGCCcgGA--UCGg -3'
miRNA:   3'- -CCaGGGCUUGcGgCCGGuaCUuuAGC- -5'
6380 3' -53.9 NC_001847.1 + 115299 0.71 0.794252
Target:  5'- --cCCCGGGCGCgGGCCAaGGGcgcuguGUCGa -3'
miRNA:   3'- ccaGGGCUUGCGgCCGGUaCUU------UAGC- -5'
6380 3' -53.9 NC_001847.1 + 113738 0.66 0.958786
Target:  5'- cGG-CCCGAAUccucgGCCGGCCc--GAAUCc -3'
miRNA:   3'- -CCaGGGCUUG-----CGGCCGGuacUUUAGc -5'
6380 3' -53.9 NC_001847.1 + 108132 0.71 0.78505
Target:  5'- gGGUCCUggcaGAAgGCCGGCCG----GUCGg -3'
miRNA:   3'- -CCAGGG----CUUgCGGCCGGUacuuUAGC- -5'
6380 3' -53.9 NC_001847.1 + 107017 1.12 0.002858
Target:  5'- aGGUCCCGAACGCCGGCCAUGAAAUCGg -3'
miRNA:   3'- -CCAGGGCUUGCGGCCGGUACUUUAGC- -5'
6380 3' -53.9 NC_001847.1 + 106938 0.66 0.954984
Target:  5'- cGGg-CCGAACGCCG-CCGUGGcg-CGc -3'
miRNA:   3'- -CCagGGCUUGCGGCcGGUACUuuaGC- -5'
6380 3' -53.9 NC_001847.1 + 106797 0.68 0.916023
Target:  5'- cGGgggCCCGGGCGCgCGGCCccgcGggG-CGc -3'
miRNA:   3'- -CCa--GGGCUUGCG-GCCGGua--CuuUaGC- -5'
6380 3' -53.9 NC_001847.1 + 106400 0.68 0.903865
Target:  5'- aGGUCCgGGcccgcgagcuucGCGCUcugcagccaGGCCAUGgcGUCGc -3'
miRNA:   3'- -CCAGGgCU------------UGCGG---------CCGGUACuuUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.