miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6381 5' -56 NC_001847.1 + 132230 0.66 0.892999
Target:  5'- gCGgcGCggACCGUG-GCcccGCUCGCgCg -3'
miRNA:   3'- aGCauCGa-UGGCACaCGu--CGAGCGgG- -5'
6381 5' -56 NC_001847.1 + 131824 0.66 0.886182
Target:  5'- ---cGGC-GCCGgcgGCAGCggCGCCCg -3'
miRNA:   3'- agcaUCGaUGGCacaCGUCGa-GCGGG- -5'
6381 5' -56 NC_001847.1 + 131608 0.67 0.823901
Target:  5'- gCGUgcagGGCUGCCGgg-GCcacAGCUCGUUCa -3'
miRNA:   3'- aGCA----UCGAUGGCacaCG---UCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 131349 0.71 0.649615
Target:  5'- cCGUgccGGCacGCCGUcGUGCAGCacauccCGCCCg -3'
miRNA:   3'- aGCA---UCGa-UGGCA-CACGUCGa-----GCGGG- -5'
6381 5' -56 NC_001847.1 + 130893 0.69 0.750406
Target:  5'- cCGacUGGCUGCUG-GcGCAGCUCGUgCCg -3'
miRNA:   3'- aGC--AUCGAUGGCaCaCGUCGAGCG-GG- -5'
6381 5' -56 NC_001847.1 + 129143 0.68 0.797431
Target:  5'- aCGUGGCggucGCCGuUGUuCGGCU-GCCCc -3'
miRNA:   3'- aGCAUCGa---UGGC-ACAcGUCGAgCGGG- -5'
6381 5' -56 NC_001847.1 + 128779 0.69 0.740647
Target:  5'- ----uGCUGCCGca-GCGGCUaCGCCCg -3'
miRNA:   3'- agcauCGAUGGCacaCGUCGA-GCGGG- -5'
6381 5' -56 NC_001847.1 + 127750 0.66 0.87187
Target:  5'- -gGUacAGCaGCUGcG-GCGGCUUGCCCg -3'
miRNA:   3'- agCA--UCGaUGGCaCaCGUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 127341 0.67 0.848782
Target:  5'- gCGgccGGCUGCCGcGgcagggGCGGCgggGCCCg -3'
miRNA:   3'- aGCa--UCGAUGGCaCa-----CGUCGag-CGGG- -5'
6381 5' -56 NC_001847.1 + 125445 0.67 0.83322
Target:  5'- gCGUGGCUgGCCGgagGacgggcgggucggcgGCAGCUCGCg- -3'
miRNA:   3'- aGCAUCGA-UGGCa--Ca--------------CGUCGAGCGgg -5'
6381 5' -56 NC_001847.1 + 121984 0.66 0.886182
Target:  5'- gCGUGGCUGCCa---GCAGCccaacCGCCg -3'
miRNA:   3'- aGCAUCGAUGGcacaCGUCGa----GCGGg -5'
6381 5' -56 NC_001847.1 + 121828 0.67 0.832382
Target:  5'- -gGUacAGCUcgGCCGacUGCAGCccggCGCCCg -3'
miRNA:   3'- agCA--UCGA--UGGCacACGUCGa---GCGGG- -5'
6381 5' -56 NC_001847.1 + 121773 0.66 0.885488
Target:  5'- gCGUAGCgcucauuUGCCGUGUaGCcGggCGCCUc -3'
miRNA:   3'- aGCAUCG-------AUGGCACA-CGuCgaGCGGG- -5'
6381 5' -56 NC_001847.1 + 120979 0.67 0.840678
Target:  5'- gCGUAaGCgcgGCCGUcgcccuaGCGGC-CGCCCa -3'
miRNA:   3'- aGCAU-CGa--UGGCAca-----CGUCGaGCGGG- -5'
6381 5' -56 NC_001847.1 + 118430 0.69 0.730792
Target:  5'- uUCGcUGGUgAUCGUGcucgucugcgccUGcCGGCUCGCCCg -3'
miRNA:   3'- -AGC-AUCGaUGGCAC------------AC-GUCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 117822 0.66 0.892999
Target:  5'- gCGccGGCUacgcgGCCGUGUGCcGCgcCGCCg -3'
miRNA:   3'- aGCa-UCGA-----UGGCACACGuCGa-GCGGg -5'
6381 5' -56 NC_001847.1 + 115707 0.69 0.740647
Target:  5'- ---cGGCUGcggcCCGUGUGC-GCUUGCCg -3'
miRNA:   3'- agcaUCGAU----GGCACACGuCGAGCGGg -5'
6381 5' -56 NC_001847.1 + 114229 0.67 0.823901
Target:  5'- ---cAGUccuCCGUGUaGC-GCUCGCCCg -3'
miRNA:   3'- agcaUCGau-GGCACA-CGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 112687 0.67 0.856686
Target:  5'- aCGgcucCUGCCGccucUGCcGCUCGCCCg -3'
miRNA:   3'- aGCauc-GAUGGCac--ACGuCGAGCGGG- -5'
6381 5' -56 NC_001847.1 + 110228 0.69 0.719852
Target:  5'- aCGU-GCggGCCGUGcuaaacaUGCGcggccuGCUCGCCCg -3'
miRNA:   3'- aGCAuCGa-UGGCAC-------ACGU------CGAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.