miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 127584 0.66 0.989332
Target:  5'- aGGCAGGUGuCGCGcAUgcgcUGAGCAUc---- -3'
miRNA:   3'- -CCGUCCAC-GUGC-UA----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 126028 0.66 0.982432
Target:  5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3'
miRNA:   3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 125516 0.74 0.696029
Target:  5'- cGGCGGGccgGCGCGGcggCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa--CGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 124912 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 121693 0.67 0.972612
Target:  5'- aGCAGGUGCGCGccCGcuagauacagccAGCGCAg--- -3'
miRNA:   3'- cCGUCCACGUGCuaGC------------UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 120933 0.66 0.987849
Target:  5'- gGGCGGGcGCGCGggCGugguGGCugAUg-- -3'
miRNA:   3'- -CCGUCCaCGUGCuaGC----UCGugUAaag -5'
6383 5' -51.2 NC_001847.1 + 109200 0.72 0.832971
Target:  5'- gGGCGGGUGC--GAUCGGGCAgAc--- -3'
miRNA:   3'- -CCGUCCACGugCUAGCUCGUgUaaag -5'
6383 5' -51.2 NC_001847.1 + 108102 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 106072 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 105228 0.74 0.716963
Target:  5'- cGCGGGcGCGCGGgcacaggCGGGCGCAcUUCg -3'
miRNA:   3'- cCGUCCaCGUGCUa------GCUCGUGUaAAG- -5'
6383 5' -51.2 NC_001847.1 + 104235 0.66 0.980274
Target:  5'- gGGCAccgcGGUGCGCGggCccaGGCGCGUg-- -3'
miRNA:   3'- -CCGU----CCACGUGCuaGc--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 103886 1.11 0.004859
Target:  5'- uGGCAGGUGCACGAUCGAGCACAUUUCc -3'
miRNA:   3'- -CCGUCCACGUGCUAGCUCGUGUAAAG- -5'
6383 5' -51.2 NC_001847.1 + 103366 0.67 0.972034
Target:  5'- aGGCAGGccguguuggccgGCGCGcgCGGGUGCAc--- -3'
miRNA:   3'- -CCGUCCa-----------CGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 101096 0.67 0.975372
Target:  5'- cGGCGGG---GCGggCGGGCGCGUUc- -3'
miRNA:   3'- -CCGUCCacgUGCuaGCUCGUGUAAag -5'
6383 5' -51.2 NC_001847.1 + 100883 0.66 0.989332
Target:  5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3'
miRNA:   3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 99380 0.67 0.969636
Target:  5'- aGCGGGUGCGaguCGAUgauaGAGCGCGc--- -3'
miRNA:   3'- cCGUCCACGU---GCUAg---CUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 98583 0.66 0.984408
Target:  5'- aGGUAGGcGCGCGG-CGccAGCGCGUc-- -3'
miRNA:   3'- -CCGUCCaCGUGCUaGC--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 97803 0.67 0.975372
Target:  5'- cGCAcGGUcGCGCGcguggccgcGUCGGGCGCGUg-- -3'
miRNA:   3'- cCGU-CCA-CGUGC---------UAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 96640 0.69 0.937264
Target:  5'- cGGCGGGUacgcgucguGCGCGGgggccggCGGGUACGcgUCg -3'
miRNA:   3'- -CCGUCCA---------CGUGCUa------GCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 95786 0.68 0.951265
Target:  5'- cGCGGG-GgGCGGcgCGGGCGCAUUa- -3'
miRNA:   3'- cCGUCCaCgUGCUa-GCUCGUGUAAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.