Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 67218 | 0.74 | 0.747741 |
Target: 5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3' miRNA: 3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 36183 | 0.68 | 0.963004 |
Target: 5'- cGGC-GGUGCGCGG-CGAGgcCGCGUa-- -3' miRNA: 3'- -CCGuCCACGUGCUaGCUC--GUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 30236 | 0.67 | 0.969636 |
Target: 5'- gGGCcgAGGUGCGCGuGUCGcuGGCgGCGUUg- -3' miRNA: 3'- -CCG--UCCACGUGC-UAGC--UCG-UGUAAag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 100883 | 0.66 | 0.989332 |
Target: 5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3' miRNA: 3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 77699 | 0.71 | 0.873792 |
Target: 5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3' miRNA: 3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 81821 | 0.71 | 0.882008 |
Target: 5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3' miRNA: 3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 20806 | 0.7 | 0.888513 |
Target: 5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3' miRNA: 3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 56617 | 0.7 | 0.888513 |
Target: 5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3' miRNA: 3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 30336 | 0.7 | 0.902245 |
Target: 5'- cGGCGGGcUGgACGA-CGAGCACc---- -3' miRNA: 3'- -CCGUCC-ACgUGCUaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 85776 | 0.68 | 0.946854 |
Target: 5'- gGGCAgcggccgaugcGGUGCGCGucgagggugCGGGCGCGUg-- -3' miRNA: 3'- -CCGU-----------CCACGUGCua-------GCUCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 106072 | 0.7 | 0.913734 |
Target: 5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3' miRNA: 3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 14568 | 0.7 | 0.902245 |
Target: 5'- cGCGGGUGCugG--CGGGCGCGc--- -3' miRNA: 3'- cCGUCCACGugCuaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 80201 | 0.73 | 0.757793 |
Target: 5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3' miRNA: 3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 52288 | 0.7 | 0.914959 |
Target: 5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3' miRNA: 3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 8725 | 0.71 | 0.848294 |
Target: 5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3' miRNA: 3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 18638 | 0.7 | 0.902245 |
Target: 5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3' miRNA: 3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 23706 | 0.69 | 0.920927 |
Target: 5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3' miRNA: 3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 68123 | 0.68 | 0.963004 |
Target: 5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3' miRNA: 3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 32891 | 0.71 | 0.866074 |
Target: 5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3' miRNA: 3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 17152 | 0.7 | 0.888513 |
Target: 5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3' miRNA: 3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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