Results 1 - 20 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6390 | 3' | -64.7 | NC_001847.1 | + | 72309 | 0.65 | 0.515941 |
Target: 5'- aGCGCCucgGGGGGCUgcggcagCUGCgcgacucGGC-CCGGCu -3' miRNA: 3'- -UGCGG---UCCUCGGa------GGCG-------CCGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 5337 | 0.66 | 0.50483 |
Target: 5'- -gGCCGgucGGAGCUggcuagccggCCGCGGCuggaugucugucucUCUGGCu -3' miRNA: 3'- ugCGGU---CCUCGGa---------GGCGCCG--------------AGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 125623 | 0.66 | 0.498395 |
Target: 5'- gACGCUAGcGcGCCgcCCGCucGGCUCgGGUc -3' miRNA: 3'- -UGCGGUC-CuCGGa-GGCG--CCGAGgCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 73162 | 0.66 | 0.498395 |
Target: 5'- cGCGCCgggcggAGGAGgCggaCGCGGCggcggagUCGGCc -3' miRNA: 3'- -UGCGG------UCCUCgGag-GCGCCGa------GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 58571 | 0.66 | 0.498395 |
Target: 5'- gGCGaagauCGGGGGCCgggCCGcCGGCUgCgugGGCa -3' miRNA: 3'- -UGCg----GUCCUCGGa--GGC-GCCGAgG---CCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 2935 | 0.66 | 0.498395 |
Target: 5'- cCGCCAGcGcggccGCCUCCagcGCGGCggccgccUCGGCg -3' miRNA: 3'- uGCGGUC-Cu----CGGAGG---CGCCGa------GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 133276 | 0.66 | 0.498395 |
Target: 5'- cGCGUCua-AGCCgcgCgGUGcGCUCCGGCg -3' miRNA: 3'- -UGCGGuccUCGGa--GgCGC-CGAGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 107870 | 0.66 | 0.498395 |
Target: 5'- cCGgCGGGcAGCCUCacaucCGGCUCucgCGGCa -3' miRNA: 3'- uGCgGUCC-UCGGAGgc---GCCGAG---GCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 39479 | 0.66 | 0.498395 |
Target: 5'- gUGCCAuGGAGaCCagcccgCCGCgcaGGCUcCCGGUg -3' miRNA: 3'- uGCGGU-CCUC-GGa-----GGCG---CCGA-GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 39853 | 0.66 | 0.50483 |
Target: 5'- cGCGCCAGccGCCgguaggcuucguccaCGCGGC-CCGGg -3' miRNA: 3'- -UGCGGUCcuCGGag-------------GCGCCGaGGCCg -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 108442 | 0.66 | 0.507598 |
Target: 5'- gACGU--GGAcGCCgagCUGCGGCUggagcccgCCGGCg -3' miRNA: 3'- -UGCGguCCU-CGGa--GGCGCCGA--------GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 31806 | 0.66 | 0.507598 |
Target: 5'- cGCGUCGGGcacuuGcCCUCCGCGGacaggggggUUGGCg -3' miRNA: 3'- -UGCGGUCCu----C-GGAGGCGCCga-------GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 88367 | 0.66 | 0.507598 |
Target: 5'- gGCGCgCGGGcgcggcggaccGGCCcCgCGCGGCgggCgGGCg -3' miRNA: 3'- -UGCG-GUCC-----------UCGGaG-GCGCCGa--GgCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 86363 | 0.66 | 0.507598 |
Target: 5'- gGCGCCcgcagacgAGGcGGCgggCCGCGGCggCgGGCg -3' miRNA: 3'- -UGCGG--------UCC-UCGga-GGCGCCGa-GgCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 13105 | 0.66 | 0.507598 |
Target: 5'- cACGCCGccguCCUCCuCGGCUgCGGCc -3' miRNA: 3'- -UGCGGUccucGGAGGcGCCGAgGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 4377 | 0.66 | 0.507598 |
Target: 5'- cGCGaCCGcGAGCgCgcgcgCCGCGGC-CCaGGCg -3' miRNA: 3'- -UGC-GGUcCUCG-Ga----GGCGCCGaGG-CCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 66680 | 0.66 | 0.507598 |
Target: 5'- cGCGCgGcGGGGCCccggCCGCGGgcgcggaccuCUgCGGCc -3' miRNA: 3'- -UGCGgU-CCUCGGa---GGCGCC----------GAgGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 37454 | 0.66 | 0.507598 |
Target: 5'- aGCGCagCAGcGGGCCUgCGUuggccgGGC-CCGGCc -3' miRNA: 3'- -UGCG--GUC-CUCGGAgGCG------CCGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 36538 | 0.66 | 0.507598 |
Target: 5'- uUGCgGGGuGCCgcgCCGCccaaGCgCCGGCg -3' miRNA: 3'- uGCGgUCCuCGGa--GGCGc---CGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 121055 | 0.66 | 0.497479 |
Target: 5'- cCGCCAGc-GCCUCCGCgauguccacgagcGGCccaagcaCCGGCc -3' miRNA: 3'- uGCGGUCcuCGGAGGCG-------------CCGa------GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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