miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 3' -64.7 NC_001847.1 + 73 0.66 0.486545
Target:  5'- cGCGgCGGGcccgggcccgcucuGGgCUCCGCcccuGGgUCCGGCg -3'
miRNA:   3'- -UGCgGUCC--------------UCgGAGGCG----CCgAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 477 0.72 0.217261
Target:  5'- gGCGCCGucauGGGugcccgcGCCUCCGCGccuGCUgCCGGCc -3'
miRNA:   3'- -UGCGGU----CCU-------CGGAGGCGC---CGA-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 585 0.77 0.097411
Target:  5'- gGCGCCGGGuccuGGcCCUCCGCGGCcgcUCCGcaGCg -3'
miRNA:   3'- -UGCGGUCC----UC-GGAGGCGCCG---AGGC--CG- -5'
6390 3' -64.7 NC_001847.1 + 761 0.68 0.402843
Target:  5'- -gGCgAGGccGGCCcgCCGcCGGCggcgCCGGCc -3'
miRNA:   3'- ugCGgUCC--UCGGa-GGC-GCCGa---GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 891 0.85 0.025525
Target:  5'- cGCGCCGGG-GCCgCCGCGGCcgCCGGCc -3'
miRNA:   3'- -UGCGGUCCuCGGaGGCGCCGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 929 0.68 0.394742
Target:  5'- gGCGCCGGGaAGCCcgagcCCGCG-C-CCGGg -3'
miRNA:   3'- -UGCGGUCC-UCGGa----GGCGCcGaGGCCg -5'
6390 3' -64.7 NC_001847.1 + 965 0.72 0.206333
Target:  5'- uGCGCCGgcacccgggccggcGGGGCUuccgCCGCGGCggCGGCa -3'
miRNA:   3'- -UGCGGU--------------CCUCGGa---GGCGCCGagGCCG- -5'
6390 3' -64.7 NC_001847.1 + 1089 0.73 0.184574
Target:  5'- cACGCCGGGcGCCgcggCCGCGGg--CGGCg -3'
miRNA:   3'- -UGCGGUCCuCGGa---GGCGCCgagGCCG- -5'
6390 3' -64.7 NC_001847.1 + 1138 0.76 0.113203
Target:  5'- aGCGgC-GGcGCCUCggcgCGCGGCUCCGGCa -3'
miRNA:   3'- -UGCgGuCCuCGGAG----GCGCCGAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 1900 0.72 0.22815
Target:  5'- aGCGCCGcgagcgcgugcGaGAGCCcgCCGCGGCg-CGGCg -3'
miRNA:   3'- -UGCGGU-----------C-CUCGGa-GGCGCCGagGCCG- -5'
6390 3' -64.7 NC_001847.1 + 1979 0.66 0.48022
Target:  5'- cCGCCAGc-GCCUCCcCGGCagCGGg -3'
miRNA:   3'- uGCGGUCcuCGGAGGcGCCGagGCCg -5'
6390 3' -64.7 NC_001847.1 + 2086 0.7 0.292875
Target:  5'- aGCGCCccgcGGGGCC-CgCGCGGCggCgGGCc -3'
miRNA:   3'- -UGCGGu---CCUCGGaG-GCGCCGa-GgCCG- -5'
6390 3' -64.7 NC_001847.1 + 2355 0.69 0.31835
Target:  5'- cGCGCCGGcccGGCCgcgUCgGCGGCggcggcuuuucgCCGGCg -3'
miRNA:   3'- -UGCGGUCc--UCGG---AGgCGCCGa-----------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 2412 0.74 0.152179
Target:  5'- uCGUCcucccccgAGGGGCCccCCGCGGCggCCGGCa -3'
miRNA:   3'- uGCGG--------UCCUCGGa-GGCGCCGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 2522 0.67 0.419358
Target:  5'- cGCGCUuugcuGCCgggCCGCGGgaccgcugcuCUCCGGCg -3'
miRNA:   3'- -UGCGGuccu-CGGa--GGCGCC----------GAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 2573 0.67 0.453582
Target:  5'- gGCG-CGGGcGCCUgCGCGGCcgCCgcGGCc -3'
miRNA:   3'- -UGCgGUCCuCGGAgGCGCCGa-GG--CCG- -5'
6390 3' -64.7 NC_001847.1 + 2617 0.66 0.48022
Target:  5'- cGCGCCggAGGuGCUUCgGCGGgaCCGcCg -3'
miRNA:   3'- -UGCGG--UCCuCGGAGgCGCCgaGGCcG- -5'
6390 3' -64.7 NC_001847.1 + 2647 0.67 0.436277
Target:  5'- uCGCCGcuugcGGcGCCUUCGCccGGCggcucggCCGGCa -3'
miRNA:   3'- uGCGGU-----CCuCGGAGGCG--CCGa------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 2784 0.7 0.267809
Target:  5'- cCGCCGGcGGCCUCCagggccgcgagcGCGGCcgccagccgcgCCGGCa -3'
miRNA:   3'- uGCGGUCcUCGGAGG------------CGCCGa----------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 2935 0.66 0.498395
Target:  5'- cCGCCAGcGcggccGCCUCCagcGCGGCggccgccUCGGCg -3'
miRNA:   3'- uGCGGUC-Cu----CGGAGG---CGCCGa------GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.