miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 3' -64.7 NC_001847.1 + 96565 1.1 0.000345
Target:  5'- aACGCCAGGAGCCUCCGCGGCUCCGGCa -3'
miRNA:   3'- -UGCGGUCCUCGGAGGCGCCGAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 103704 0.85 0.025525
Target:  5'- cGCGCCGGG-GCCgCCGCGGCcgCCGGCc -3'
miRNA:   3'- -UGCGGUCCuCGGaGGCGCCGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 891 0.85 0.025525
Target:  5'- cGCGCCGGG-GCCgCCGCGGCcgCCGGCc -3'
miRNA:   3'- -UGCGGUCCuCGGaGGCGCCGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 12460 0.84 0.031453
Target:  5'- cGCGCgGcGGAGCCUCCGCGGCUUcccgcguggCGGCg -3'
miRNA:   3'- -UGCGgU-CCUCGGAGGCGCCGAG---------GCCG- -5'
6390 3' -64.7 NC_001847.1 + 101377 0.81 0.04765
Target:  5'- uGCGCCgcGGGGGCUgcCCGCGGCgccgCCGGCa -3'
miRNA:   3'- -UGCGG--UCCUCGGa-GGCGCCGa---GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 74663 0.81 0.048897
Target:  5'- uGCGCCuGGAGCCggccgagCCGCGGCaggacggcggCCGGCg -3'
miRNA:   3'- -UGCGGuCCUCGGa------GGCGCCGa---------GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 42116 0.79 0.07354
Target:  5'- gGCGCCGGGGGCCgcuucCCGCguuggcgagagcuGGC-CCGGCg -3'
miRNA:   3'- -UGCGGUCCUCGGa----GGCG-------------CCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 12069 0.79 0.07354
Target:  5'- gACGCCGaggccgcGGAGCg-CCGCGGgUCCGGCg -3'
miRNA:   3'- -UGCGGU-------CCUCGgaGGCGCCgAGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 3980 0.78 0.075629
Target:  5'- gGCGCCGGGGGCCgggCgCGCGGCcCCgcggGGCg -3'
miRNA:   3'- -UGCGGUCCUCGGa--G-GCGCCGaGG----CCG- -5'
6390 3' -64.7 NC_001847.1 + 3134 0.78 0.075629
Target:  5'- aGCaCCGGGAGCC-CgGCGGCgCCGGCg -3'
miRNA:   3'- -UGcGGUCCUCGGaGgCGCCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 105947 0.78 0.075629
Target:  5'- aGCaCCGGGAGCC-CgGCGGCgCCGGCg -3'
miRNA:   3'- -UGcGGUCCUCGGaGgCGCCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 25196 0.78 0.079575
Target:  5'- -gGCCAGcGAGCC-CCGCGcGCggCCGGCa -3'
miRNA:   3'- ugCGGUC-CUCGGaGGCGC-CGa-GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 26476 0.78 0.083717
Target:  5'- aGCGCgGGGAGCggaaacucgUCCGCGGCcCCGGCc -3'
miRNA:   3'- -UGCGgUCCUCGg--------AGGCGCCGaGGCCG- -5'
6390 3' -64.7 NC_001847.1 + 115783 0.78 0.088065
Target:  5'- -gGCCAgagcguucgcGGAGCCgCUGCGGCUCCGcGCg -3'
miRNA:   3'- ugCGGU----------CCUCGGaGGCGCCGAGGC-CG- -5'
6390 3' -64.7 NC_001847.1 + 60461 0.77 0.092626
Target:  5'- aGCGCCGGccGCCguccugCCGCGGCUcggCCGGCu -3'
miRNA:   3'- -UGCGGUCcuCGGa-----GGCGCCGA---GGCCG- -5'
6390 3' -64.7 NC_001847.1 + 101621 0.77 0.09499
Target:  5'- cGCGCCcGGcGCCUCCGCGGCggcgCCcGCc -3'
miRNA:   3'- -UGCGGuCCuCGGAGGCGCCGa---GGcCG- -5'
6390 3' -64.7 NC_001847.1 + 103398 0.77 0.097411
Target:  5'- gGCGCCGGGuccuGGcCCUCCGCGGCcgcUCCGcaGCg -3'
miRNA:   3'- -UGCGGUCC----UC-GGAGGCGCCG---AGGC--CG- -5'
6390 3' -64.7 NC_001847.1 + 585 0.77 0.097411
Target:  5'- gGCGCCGGGuccuGGcCCUCCGCGGCcgcUCCGcaGCg -3'
miRNA:   3'- -UGCGGUCC----UC-GGAGGCGCCG---AGGC--CG- -5'
6390 3' -64.7 NC_001847.1 + 81340 0.77 0.09964
Target:  5'- cGCGCCAGGGGgcgcagaCCUCCucgcgGCGGCUgCGGUg -3'
miRNA:   3'- -UGCGGUCCUC-------GGAGG-----CGCCGAgGCCG- -5'
6390 3' -64.7 NC_001847.1 + 123063 0.77 0.09989
Target:  5'- gGCGCCGGacccgcGGCgCUCCGCGGCcUCGGCg -3'
miRNA:   3'- -UGCGGUCc-----UCG-GAGGCGCCGaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.