Results 1 - 20 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6390 | 3' | -64.7 | NC_001847.1 | + | 103704 | 0.85 | 0.025525 |
Target: 5'- cGCGCCGGG-GCCgCCGCGGCcgCCGGCc -3' miRNA: 3'- -UGCGGUCCuCGGaGGCGCCGa-GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 60830 | 0.75 | 0.12503 |
Target: 5'- gGCGCgAGGGGCgC-CCGCGGCgcugCgCGGCg -3' miRNA: 3'- -UGCGgUCCUCG-GaGGCGCCGa---G-GCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 34085 | 0.75 | 0.134641 |
Target: 5'- aGCGCguGGcGGCCgCCGUGGCUCgcgCGGCg -3' miRNA: 3'- -UGCGguCC-UCGGaGGCGCCGAG---GCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 101057 | 0.67 | 0.411049 |
Target: 5'- cCGCCGaggccggccccGGGGCCgCCGCGGgggCCGGg -3' miRNA: 3'- uGCGGU-----------CCUCGGaGGCGCCga-GGCCg -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 12069 | 0.79 | 0.07354 |
Target: 5'- gACGCCGaggccgcGGAGCg-CCGCGGgUCCGGCg -3' miRNA: 3'- -UGCGGU-------CCUCGgaGGCGCCgAGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 105947 | 0.78 | 0.075629 |
Target: 5'- aGCaCCGGGAGCC-CgGCGGCgCCGGCg -3' miRNA: 3'- -UGcGGUCCUCGGaGgCGCCGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 26476 | 0.78 | 0.083717 |
Target: 5'- aGCGCgGGGAGCggaaacucgUCCGCGGCcCCGGCc -3' miRNA: 3'- -UGCGgUCCUCGg--------AGGCGCCGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 115783 | 0.78 | 0.088065 |
Target: 5'- -gGCCAgagcguucgcGGAGCCgCUGCGGCUCCGcGCg -3' miRNA: 3'- ugCGGU----------CCUCGGaGGCGCCGAGGC-CG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 106792 | 0.76 | 0.110414 |
Target: 5'- gGCGCCGGGGGCCcgggCgCGCGGCcCCgcggGGCg -3' miRNA: 3'- -UGCGGUCCUCGGa---G-GCGCCGaGG----CCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 123787 | 0.76 | 0.11898 |
Target: 5'- -gGCCucGGGGCCUgCGCGGCggCGGCa -3' miRNA: 3'- ugCGGu-CCUCGGAgGCGCCGagGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 103951 | 0.76 | 0.113203 |
Target: 5'- aGCGgC-GGcGCCUCggcgCGCGGCUCCGGCa -3' miRNA: 3'- -UGCgGuCCuCGGAG----GCGCCGAGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 81340 | 0.77 | 0.09964 |
Target: 5'- cGCGCCAGGGGgcgcagaCCUCCucgcgGCGGCUgCGGUg -3' miRNA: 3'- -UGCGGUCCUC-------GGAGG-----CGCCGAgGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 12460 | 0.84 | 0.031453 |
Target: 5'- cGCGCgGcGGAGCCUCCGCGGCUUcccgcguggCGGCg -3' miRNA: 3'- -UGCGgU-CCUCGGAGGCGCCGAG---------GCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 66267 | 0.76 | 0.116058 |
Target: 5'- -gGCCGGGgaGGCCUCUuCGGC-CCGGCg -3' miRNA: 3'- ugCGGUCC--UCGGAGGcGCCGaGGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 101377 | 0.81 | 0.04765 |
Target: 5'- uGCGCCgcGGGGGCUgcCCGCGGCgccgCCGGCa -3' miRNA: 3'- -UGCGG--UCCUCGGa-GGCGCCGa---GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 103398 | 0.77 | 0.097411 |
Target: 5'- gGCGCCGGGuccuGGcCCUCCGCGGCcgcUCCGcaGCg -3' miRNA: 3'- -UGCGGUCC----UC-GGAGGCGCCG---AGGC--CG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 73120 | 0.76 | 0.11898 |
Target: 5'- aACGCCGGGAGCCgcauacggCCGCagGGCcCCGcGCc -3' miRNA: 3'- -UGCGGUCCUCGGa-------GGCG--CCGaGGC-CG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 134234 | 0.75 | 0.12503 |
Target: 5'- gGCGCCGGcGggcggcGGCCggcggCCGCGGCggccCCGGCg -3' miRNA: 3'- -UGCGGUC-C------UCGGa----GGCGCCGa---GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 74663 | 0.81 | 0.048897 |
Target: 5'- uGCGCCuGGAGCCggccgagCCGCGGCaggacggcggCCGGCg -3' miRNA: 3'- -UGCGGuCCUCGGa------GGCGCCGa---------GGCCG- -5' |
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6390 | 3' | -64.7 | NC_001847.1 | + | 25196 | 0.78 | 0.079575 |
Target: 5'- -gGCCAGcGAGCC-CCGCGcGCggCCGGCa -3' miRNA: 3'- ugCGGUC-CUCGGaGGCGC-CGa-GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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