Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6390 | 5' | -50.4 | NC_001847.1 | + | 104830 | 0.66 | 0.994154 |
Target: 5'- -cGCCGGggGgGCGGGcg-UCCgcaGCu -3' miRNA: 3'- gaCGGUCauUgCGCCCaaaAGGaa-CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 101846 | 0.66 | 0.989694 |
Target: 5'- gCUGCgCAcaAACGCGGGggcgucgUCCUcGCc -3' miRNA: 3'- -GACG-GUcaUUGCGCCCaaa----AGGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 59129 | 0.66 | 0.993221 |
Target: 5'- gCU-CCGGccGCGCGGGUggUCCcagUUGUa -3' miRNA: 3'- -GAcGGUCauUGCGCCCAaaAGG---AACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 6847 | 0.66 | 0.991835 |
Target: 5'- -gGCgaGGUGcucgagcagcacgcGCGCGGGUagggCCUUGCc -3' miRNA: 3'- gaCGg-UCAU--------------UGCGCCCAaaa-GGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 57689 | 0.66 | 0.994154 |
Target: 5'- gUGCUGGgcGcCGCGGGUg--CCgcGCu -3' miRNA: 3'- gACGGUCauU-GCGCCCAaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 38574 | 0.66 | 0.989694 |
Target: 5'- gCUGCCGGagcCGCGGaGgc-UCCUgGCg -3' miRNA: 3'- -GACGGUCauuGCGCC-CaaaAGGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 4970 | 0.66 | 0.989694 |
Target: 5'- -gGCCGGgcgccCGCGGGgucgugacgUCCUcGCa -3' miRNA: 3'- gaCGGUCauu--GCGCCCaaa------AGGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 2530 | 0.66 | 0.994154 |
Target: 5'- gCUGCCGGgc-CGCGGGa---CCgcUGCu -3' miRNA: 3'- -GACGGUCauuGCGCCCaaaaGGa-ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 49947 | 0.66 | 0.991001 |
Target: 5'- -cGCC-GUGGCGCGcGGUg--CCgcGCa -3' miRNA: 3'- gaCGGuCAUUGCGC-CCAaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 58578 | 0.66 | 0.994154 |
Target: 5'- -gGCCAGcUAA-GCGGGccg-CUUUGCg -3' miRNA: 3'- gaCGGUC-AUUgCGCCCaaaaGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 54521 | 0.66 | 0.993221 |
Target: 5'- -gGgCGGUGGgGCGGGgccgUCCggggGCg -3' miRNA: 3'- gaCgGUCAUUgCGCCCaaa-AGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 123666 | 0.66 | 0.993221 |
Target: 5'- -aGCCAgauGUGugGCGGGgcucgCCacGCg -3' miRNA: 3'- gaCGGU---CAUugCGCCCaaaa-GGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 84009 | 0.66 | 0.993221 |
Target: 5'- -cGCCAGcgagAGCGUGuGGUUggCCUcGUa -3' miRNA: 3'- gaCGGUCa---UUGCGC-CCAAaaGGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 84700 | 0.66 | 0.991001 |
Target: 5'- uUGCCGuccuuGUcgcAGCGCGGGU--UCCcgGCa -3' miRNA: 3'- gACGGU-----CA---UUGCGCCCAaaAGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 44127 | 0.66 | 0.991001 |
Target: 5'- -aGCCGGUugcuuuACGUGGGcg--CCaUGCg -3' miRNA: 3'- gaCGGUCAu-----UGCGCCCaaaaGGaACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 88188 | 0.66 | 0.989694 |
Target: 5'- -gGCCcg-GGCGCGGGgcUUUCUgcUGCc -3' miRNA: 3'- gaCGGucaUUGCGCCCaaAAGGA--ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 1344 | 0.66 | 0.989694 |
Target: 5'- -cGCCGcgcccuGCGCGGccaugUCCUUGCg -3' miRNA: 3'- gaCGGUcau---UGCGCCcaaa-AGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 104157 | 0.66 | 0.989694 |
Target: 5'- -cGCCGcgcccuGCGCGGccaugUCCUUGCg -3' miRNA: 3'- gaCGGUcau---UGCGCCcaaa-AGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 26751 | 0.67 | 0.98664 |
Target: 5'- -gGCCGuagAGCGCGGGUgcgcggCCUggucagUGCg -3' miRNA: 3'- gaCGGUca-UUGCGCCCAaaa---GGA------ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 61870 | 0.67 | 0.98664 |
Target: 5'- cCUGCCGGcgccCGCGGGggUUgCacgGCg -3' miRNA: 3'- -GACGGUCauu-GCGCCCaaAAgGaa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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