miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6390 5' -50.4 NC_001847.1 + 1344 0.66 0.989694
Target:  5'- -cGCCGcgcccuGCGCGGccaugUCCUUGCg -3'
miRNA:   3'- gaCGGUcau---UGCGCCcaaa-AGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 1397 0.68 0.972698
Target:  5'- gCUGCCGGUAcucGCGCGGcGgcacgggcaCCgcggUGCg -3'
miRNA:   3'- -GACGGUCAU---UGCGCC-Caaaa-----GGa---ACG- -5'
6390 5' -50.4 NC_001847.1 + 2530 0.66 0.994154
Target:  5'- gCUGCCGGgc-CGCGGGa---CCgcUGCu -3'
miRNA:   3'- -GACGGUCauuGCGCCCaaaaGGa-ACG- -5'
6390 5' -50.4 NC_001847.1 + 3724 0.67 0.984873
Target:  5'- -cGCCGcGUAGCGCGcGGccg-CCUcGCg -3'
miRNA:   3'- gaCGGU-CAUUGCGC-CCaaaaGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 4970 0.66 0.989694
Target:  5'- -gGCCGGgcgccCGCGGGgucgugacgUCCUcGCa -3'
miRNA:   3'- gaCGGUCauu--GCGCCCaaa------AGGAaCG- -5'
6390 5' -50.4 NC_001847.1 + 6329 0.68 0.9785
Target:  5'- -gGCCAcGU-ACGCGGGUg--CCccgGCg -3'
miRNA:   3'- gaCGGU-CAuUGCGCCCAaaaGGaa-CG- -5'
6390 5' -50.4 NC_001847.1 + 6847 0.66 0.991835
Target:  5'- -gGCgaGGUGcucgagcagcacgcGCGCGGGUagggCCUUGCc -3'
miRNA:   3'- gaCGg-UCAU--------------UGCGCCCAaaa-GGAACG- -5'
6390 5' -50.4 NC_001847.1 + 8529 0.71 0.889703
Target:  5'- uCUGCCAGUGuucucACGUGGGg--UCCcgagaggGCu -3'
miRNA:   3'- -GACGGUCAU-----UGCGCCCaaaAGGaa-----CG- -5'
6390 5' -50.4 NC_001847.1 + 9712 0.73 0.834203
Target:  5'- -gGCCAGccacGCGCGGGUccUCCggcgGCg -3'
miRNA:   3'- gaCGGUCau--UGCGCCCAaaAGGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 10937 0.68 0.9785
Target:  5'- -aGCCGGcUGGCGCGGcuggcCUUUGCg -3'
miRNA:   3'- gaCGGUC-AUUGCGCCcaaaaGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 13869 0.67 0.982934
Target:  5'- cCUGCUAGcgGACGCGGcacugCCgcuggUGCg -3'
miRNA:   3'- -GACGGUCa-UUGCGCCcaaaaGGa----ACG- -5'
6390 5' -50.4 NC_001847.1 + 15554 0.67 0.98664
Target:  5'- -cGCCgGGUGGCGCGGGggaacccCCaucgGCg -3'
miRNA:   3'- gaCGG-UCAUUGCGCCCaaaa---GGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 19680 0.75 0.696979
Target:  5'- gUGCCc---GCGCGGGUguggcgUUUCCUUGCc -3'
miRNA:   3'- gACGGucauUGCGCCCA------AAAGGAACG- -5'
6390 5' -50.4 NC_001847.1 + 21787 0.7 0.933104
Target:  5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3'
miRNA:   3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5'
6390 5' -50.4 NC_001847.1 + 26512 0.72 0.851189
Target:  5'- cCUGCCGG--GCGCGGGg---CCggggGCg -3'
miRNA:   3'- -GACGGUCauUGCGCCCaaaaGGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 26751 0.67 0.98664
Target:  5'- -gGCCGuagAGCGCGGGUgcgcggCCUggucagUGCg -3'
miRNA:   3'- gaCGGUca-UUGCGCCCAaaa---GGA------ACG- -5'
6390 5' -50.4 NC_001847.1 + 27792 0.71 0.916068
Target:  5'- -cGCCGGaGACGCGGGggccaCCgaggGCg -3'
miRNA:   3'- gaCGGUCaUUGCGCCCaaaa-GGaa--CG- -5'
6390 5' -50.4 NC_001847.1 + 27858 0.7 0.927688
Target:  5'- -cGCCAGgGACGCGGGgggcgCCgaggacGCg -3'
miRNA:   3'- gaCGGUCaUUGCGCCCaaaa-GGaa----CG- -5'
6390 5' -50.4 NC_001847.1 + 32377 0.73 0.842801
Target:  5'- -cGCCGGcguCGCGGGcgucgcgCCUUGCg -3'
miRNA:   3'- gaCGGUCauuGCGCCCaaaa---GGAACG- -5'
6390 5' -50.4 NC_001847.1 + 38574 0.66 0.989694
Target:  5'- gCUGCCGGagcCGCGGaGgc-UCCUgGCg -3'
miRNA:   3'- -GACGGUCauuGCGCC-CaaaAGGAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.