Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6390 | 5' | -50.4 | NC_001847.1 | + | 96599 | 1.14 | 0.004375 |
Target: 5'- gCUGCCAGUAACGCGGGUUUUCCUUGCg -3' miRNA: 3'- -GACGGUCAUUGCGCCCAAAAGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 19680 | 0.75 | 0.696979 |
Target: 5'- gUGCCc---GCGCGGGUguggcgUUUCCUUGCc -3' miRNA: 3'- gACGGucauUGCGCCCA------AAAGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 9712 | 0.73 | 0.834203 |
Target: 5'- -gGCCAGccacGCGCGGGUccUCCggcgGCg -3' miRNA: 3'- gaCGGUCau--UGCGCCCAaaAGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 32377 | 0.73 | 0.842801 |
Target: 5'- -cGCCGGcguCGCGGGcgucgcgCCUUGCg -3' miRNA: 3'- gaCGGUCauuGCGCCCaaaa---GGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 26512 | 0.72 | 0.851189 |
Target: 5'- cCUGCCGG--GCGCGGGg---CCggggGCg -3' miRNA: 3'- -GACGGUCauUGCGCCCaaaaGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 129325 | 0.72 | 0.851189 |
Target: 5'- cCUGCCGG--GCGCGGGg---CCggggGCg -3' miRNA: 3'- -GACGGUCauUGCGCCCaaaaGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 116450 | 0.72 | 0.875008 |
Target: 5'- gCUGgCGGUGACGCGGG----CCgUGCu -3' miRNA: 3'- -GACgGUCAUUGCGCCCaaaaGGaACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 111342 | 0.71 | 0.889703 |
Target: 5'- uCUGCCAGUGuucucACGUGGGg--UCCcgagaggGCu -3' miRNA: 3'- -GACGGUCAU-----UGCGCCCaaaAGGaa-----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 8529 | 0.71 | 0.889703 |
Target: 5'- uCUGCCAGUGuucucACGUGGGg--UCCcgagaggGCu -3' miRNA: 3'- -GACGGUCAU-----UGCGCCCaaaAGGaa-----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 66503 | 0.71 | 0.892524 |
Target: 5'- -gGCCAGcGGCGCGGuGgaggcgcgccgCCUUGCg -3' miRNA: 3'- gaCGGUCaUUGCGCC-Caaaa-------GGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 45147 | 0.71 | 0.9034 |
Target: 5'- gUGCCGGcggugAGCGCGGGgga-CCUuuauUGCa -3' miRNA: 3'- gACGGUCa----UUGCGCCCaaaaGGA----ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 130605 | 0.71 | 0.916068 |
Target: 5'- -cGCCGGaGACGCGGGggccaCCgaggGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 27792 | 0.71 | 0.916068 |
Target: 5'- -cGCCGGaGACGCGGGggccaCCgaggGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 62903 | 0.7 | 0.927688 |
Target: 5'- -aGCgGGUGGCGCGGGUgcUCgggGCc -3' miRNA: 3'- gaCGgUCAUUGCGCCCAaaAGgaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 27858 | 0.7 | 0.927688 |
Target: 5'- -cGCCAGgGACGCGGGgggcgCCgaggacGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 130671 | 0.7 | 0.927688 |
Target: 5'- -cGCCAGgGACGCGGGgggcgCCgaggacGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 21787 | 0.7 | 0.933104 |
Target: 5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3' miRNA: 3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 124600 | 0.7 | 0.933104 |
Target: 5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3' miRNA: 3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 133724 | 0.7 | 0.938256 |
Target: 5'- gUGCCuGgcgGGCGCGGGg---CCgcgUGCc -3' miRNA: 3'- gACGGuCa--UUGCGCCCaaaaGGa--ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 88245 | 0.7 | 0.943147 |
Target: 5'- -gGCCGGcgcGGCGCGGGgcg-CCggGCg -3' miRNA: 3'- gaCGGUCa--UUGCGCCCaaaaGGaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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