Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6390 | 5' | -50.4 | NC_001847.1 | + | 9712 | 0.73 | 0.834203 |
Target: 5'- -gGCCAGccacGCGCGGGUccUCCggcgGCg -3' miRNA: 3'- gaCGGUCau--UGCGCCCAaaAGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 69354 | 0.67 | 0.98809 |
Target: 5'- -cGCUGGUGcuggcgcGCGCGGcGg--UCUUUGCg -3' miRNA: 3'- gaCGGUCAU-------UGCGCC-CaaaAGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 43747 | 0.67 | 0.988244 |
Target: 5'- uCUGCCAacAACGCGGGcc-UCUUcgacUGCa -3' miRNA: 3'- -GACGGUcaUUGCGCCCaaaAGGA----ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 58578 | 0.66 | 0.994154 |
Target: 5'- -gGCCAGcUAA-GCGGGccg-CUUUGCg -3' miRNA: 3'- gaCGGUC-AUUgCGCCCaaaaGGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 66503 | 0.71 | 0.892524 |
Target: 5'- -gGCCAGcGGCGCGGuGgaggcgcgccgCCUUGCg -3' miRNA: 3'- gaCGGUCaUUGCGCC-Caaaa-------GGAACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 45147 | 0.71 | 0.9034 |
Target: 5'- gUGCCGGcggugAGCGCGGGgga-CCUuuauUGCa -3' miRNA: 3'- gACGGUCa----UUGCGCCCaaaaGGA----ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 130671 | 0.7 | 0.927688 |
Target: 5'- -cGCCAGgGACGCGGGgggcgCCgaggacGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 124600 | 0.7 | 0.933104 |
Target: 5'- -cGCCGGccgGGCGCGGGUcc-CCggGCc -3' miRNA: 3'- gaCGGUCa--UUGCGCCCAaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 6329 | 0.68 | 0.9785 |
Target: 5'- -gGCCAcGU-ACGCGGGUg--CCccgGCg -3' miRNA: 3'- gaCGGU-CAuUGCGCCCAaaaGGaa-CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 26751 | 0.67 | 0.98664 |
Target: 5'- -gGCCGuagAGCGCGGGUgcgcggCCUggucagUGCg -3' miRNA: 3'- gaCGGUca-UUGCGCCCAaaa---GGA------ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 75652 | 0.67 | 0.982934 |
Target: 5'- -aGCCGGaGGCGCGGGcgUUgCUcGUg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaAAgGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 49397 | 0.68 | 0.975988 |
Target: 5'- -gGCCugGGUGGCGCGGGgcugacggCCaaGCu -3' miRNA: 3'- gaCGG--UCAUUGCGCCCaaaa----GGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 129325 | 0.72 | 0.851189 |
Target: 5'- cCUGCCGG--GCGCGGGg---CCggggGCg -3' miRNA: 3'- -GACGGUCauUGCGCCCaaaaGGaa--CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 13869 | 0.67 | 0.982934 |
Target: 5'- cCUGCUAGcgGACGCGGcacugCCgcuggUGCg -3' miRNA: 3'- -GACGGUCa-UUGCGCCcaaaaGGa----ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 116450 | 0.72 | 0.875008 |
Target: 5'- gCUGgCGGUGACGCGGG----CCgUGCu -3' miRNA: 3'- -GACgGUCAUUGCGCCCaaaaGGaACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 104210 | 0.68 | 0.972698 |
Target: 5'- gCUGCCGGUAcucGCGCGGcGgcacgggcaCCgcggUGCg -3' miRNA: 3'- -GACGGUCAU---UGCGCC-Caaaa-----GGa---ACG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 106537 | 0.67 | 0.984873 |
Target: 5'- -cGCCGcGUAGCGCGcGGccg-CCUcGCg -3' miRNA: 3'- gaCGGU-CAUUGCGC-CCaaaaGGAaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 60860 | 0.67 | 0.988244 |
Target: 5'- -cGCCAGggcguccAGCGCGGGgcggCCgcGCc -3' miRNA: 3'- gaCGGUCa------UUGCGCCCaaaaGGaaCG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 111342 | 0.71 | 0.889703 |
Target: 5'- uCUGCCAGUGuucucACGUGGGg--UCCcgagaggGCu -3' miRNA: 3'- -GACGGUCAU-----UGCGCCCaaaAGGaa-----CG- -5' |
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6390 | 5' | -50.4 | NC_001847.1 | + | 130605 | 0.71 | 0.916068 |
Target: 5'- -cGCCGGaGACGCGGGggccaCCgaggGCg -3' miRNA: 3'- gaCGGUCaUUGCGCCCaaaa-GGaa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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