miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 3' -56.9 NC_001847.1 + 60713 0.66 0.869999
Target:  5'- gUCGuGCGCcgccacgaccuccacGACGgGCGcGGGCGCGGc- -3'
miRNA:   3'- -AGUuUGCG---------------CUGCaUGC-CCCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 94505 0.66 0.851657
Target:  5'- -gAGGCGCGGCGgACGuGGGgGaaaGGGAg -3'
miRNA:   3'- agUUUGCGCUGCaUGC-CCCgCg--CCUU- -5'
6395 3' -56.9 NC_001847.1 + 5303 0.66 0.851657
Target:  5'- gCGAGCGCGACG-GCGaGGGUccugGCaGAAg -3'
miRNA:   3'- aGUUUGCGCUGCaUGC-CCCG----CGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 110114 0.66 0.851657
Target:  5'- gCAAGCGUGGCaucaugGGGGCGCuGAAg -3'
miRNA:   3'- aGUUUGCGCUGcaug--CCCCGCGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 12369 0.66 0.851657
Target:  5'- -gGAGCGuCGGCGgcugcggccuCGGGGCGCGu-- -3'
miRNA:   3'- agUUUGC-GCUGCau--------GCCCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 96087 0.66 0.84367
Target:  5'- gCAAugGCGGagcCGgaguCGGGGC-CGGAGc -3'
miRNA:   3'- aGUUugCGCU---GCau--GCCCCGcGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 96198 0.66 0.835491
Target:  5'- gCAAugGCGGggcCGgaguCGGGGC-CGGAGu -3'
miRNA:   3'- aGUUugCGCU---GCau--GCCCCGcGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 37696 0.66 0.835491
Target:  5'- --uGGCGCGGC-UGCGGcGCGCGGc- -3'
miRNA:   3'- aguUUGCGCUGcAUGCCcCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 32896 0.66 0.835491
Target:  5'- cUCGGGgGcCGGCGgggaagcCGGGGCcGCGGAc -3'
miRNA:   3'- -AGUUUgC-GCUGCau-----GCCCCG-CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 132656 0.66 0.851657
Target:  5'- ----uCGCGACGUcuucacACGGcGGCGgGGGc -3'
miRNA:   3'- aguuuGCGCUGCA------UGCC-CCGCgCCUu -5'
6395 3' -56.9 NC_001847.1 + 56299 0.66 0.859444
Target:  5'- gCAGucUGCGGCGUcgcGCGgcGGGCGCGcGAAg -3'
miRNA:   3'- aGUUu-GCGCUGCA---UGC--CCCGCGC-CUU- -5'
6395 3' -56.9 NC_001847.1 + 124693 0.66 0.859444
Target:  5'- cCAgcAACGCGGCcaggggaGCcGGGCGCGGGGg -3'
miRNA:   3'- aGU--UUGCGCUGca-----UGcCCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 15315 0.66 0.867025
Target:  5'- gUCGGGggcCGCgGGCGUaGCGGGG-GCGGGc -3'
miRNA:   3'- -AGUUU---GCG-CUGCA-UGCCCCgCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 12931 0.66 0.867025
Target:  5'- -gGGGCGCG-CGUGucgucgugcggUGGGGCgGCGGGc -3'
miRNA:   3'- agUUUGCGCuGCAU-----------GCCCCG-CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 104377 0.66 0.867025
Target:  5'- gCAGacGCGCGGCGcugcaGCGGGcCGCGGu- -3'
miRNA:   3'- aGUU--UGCGCUGCa----UGCCCcGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 70393 0.66 0.859444
Target:  5'- cCGggUGCGACuGUAcggcCGGGGUGUccGGAAu -3'
miRNA:   3'- aGUuuGCGCUG-CAU----GCCCCGCG--CCUU- -5'
6395 3' -56.9 NC_001847.1 + 133711 0.66 0.859444
Target:  5'- cCGAGCGCaaauaGUGCcuggcGGGCGCGGGg -3'
miRNA:   3'- aGUUUGCGcug--CAUGc----CCCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 80345 0.66 0.859444
Target:  5'- cUCGccAGCGCGGC--GCGGaaGGCGCGGc- -3'
miRNA:   3'- -AGU--UUGCGCUGcaUGCC--CCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 53705 0.66 0.859444
Target:  5'- gCGAGCGCGcCGccgGCGGcucgcGGgGCGGAu -3'
miRNA:   3'- aGUUUGCGCuGCa--UGCC-----CCgCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 14654 0.66 0.859444
Target:  5'- cCGcuCGCuGCGaGCGGGGCGCGu-- -3'
miRNA:   3'- aGUuuGCGcUGCaUGCCCCGCGCcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.