miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 3' -56.9 NC_001847.1 + 107819 0.82 0.136691
Target:  5'- -aAAGCGCGGCG-GCGGcGGCGCGGAGg -3'
miRNA:   3'- agUUUGCGCUGCaUGCC-CCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 135026 0.72 0.522836
Target:  5'- gCGGGCGgGGC---CGGGGCGCGGGg -3'
miRNA:   3'- aGUUUGCgCUGcauGCCCCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 17293 0.72 0.532709
Target:  5'- -gGAGCGCGGCGgguaguacuCGGcGGCGCGGc- -3'
miRNA:   3'- agUUUGCGCUGCau-------GCC-CCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 60713 0.66 0.869999
Target:  5'- gUCGuGCGCcgccacgaccuccacGACGgGCGcGGGCGCGGc- -3'
miRNA:   3'- -AGUuUGCG---------------CUGCaUGC-CCCGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 31217 0.77 0.287585
Target:  5'- -aGGGCGCGGCGUgggcgcgcgaaaGCGGGGCGCgcccGGAAa -3'
miRNA:   3'- agUUUGCGCUGCA------------UGCCCCGCG----CCUU- -5'
6395 3' -56.9 NC_001847.1 + 19738 0.75 0.35322
Target:  5'- cCGGACGCGgcgggccgcuuaGCGggaagGCGGGGUGCGGGc -3'
miRNA:   3'- aGUUUGCGC------------UGCa----UGCCCCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 28291 0.74 0.402528
Target:  5'- -aGGACGCGGCGUGCGuGGGUGUGu-- -3'
miRNA:   3'- agUUUGCGCUGCAUGC-CCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 48862 0.73 0.43503
Target:  5'- --cGGCGCGAgGUACGGGuugaaaaacccagcGCGCGGGGg -3'
miRNA:   3'- aguUUGCGCUgCAUGCCC--------------CGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 32049 0.73 0.474637
Target:  5'- ----cCGCGAaagGUcCGGGGCGCGGAGa -3'
miRNA:   3'- aguuuGCGCUg--CAuGCCCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 108029 0.72 0.503309
Target:  5'- cUCGc-CGCGGCGgccgGCGGGGCGCGc-- -3'
miRNA:   3'- -AGUuuGCGCUGCa---UGCCCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 33482 0.72 0.493665
Target:  5'- uUCGAG-GCGAUGUccgcgGCGGcGGCGCGGGc -3'
miRNA:   3'- -AGUUUgCGCUGCA-----UGCC-CCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 106804 0.73 0.465262
Target:  5'- cCGGGCGCG-CGgccccGCGGGGCGcCGGGc -3'
miRNA:   3'- aGUUUGCGCuGCa----UGCCCCGC-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 134830 0.8 0.190347
Target:  5'- -gGAGCGCGAagcuccgGCGGGGCGCGGGGa -3'
miRNA:   3'- agUUUGCGCUgca----UGCCCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 46440 0.72 0.503309
Target:  5'- cUCGGGCGCGGCGgugGGGaugcgcGCGCGGAu -3'
miRNA:   3'- -AGUUUGCGCUGCaugCCC------CGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 34408 0.79 0.215506
Target:  5'- gCAGACGCGGCGcugGGGGCgGCGGAAg -3'
miRNA:   3'- aGUUUGCGCUGCaugCCCCG-CGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 48490 0.73 0.446806
Target:  5'- gUCGAGCGCGGCGcgcucCGGGGCggcGCGGc- -3'
miRNA:   3'- -AGUUUGCGCUGCau---GCCCCG---CGCCuu -5'
6395 3' -56.9 NC_001847.1 + 74470 0.72 0.503309
Target:  5'- cCGGACGUGcUGUgccGCGaGGGCGCGGAc -3'
miRNA:   3'- aGUUUGCGCuGCA---UGC-CCCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 134775 0.72 0.522836
Target:  5'- ---cGCGCGGCGcGCGGGGCGggcccCGGGg -3'
miRNA:   3'- aguuUGCGCUGCaUGCCCCGC-----GCCUu -5'
6395 3' -56.9 NC_001847.1 + 121357 0.77 0.274368
Target:  5'- uUCu-GCGCGGCGgGCGGGGUGgGGAGc -3'
miRNA:   3'- -AGuuUGCGCUGCaUGCCCCGCgCCUU- -5'
6395 3' -56.9 NC_001847.1 + 66332 0.74 0.394011
Target:  5'- ----cUGCGGCGggUGGGGCGCGGGc -3'
miRNA:   3'- aguuuGCGCUGCauGCCCCGCGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.