Results 1 - 20 of 242 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6395 | 3' | -56.9 | NC_001847.1 | + | 92669 | 1.06 | 0.003317 |
Target: 5'- gUCAAACGCGACGUACGGGGCGCGGAAc -3' miRNA: 3'- -AGUUUGCGCUGCAUGCCCCGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 5006 | 0.82 | 0.136691 |
Target: 5'- -aAAGCGCGGCG-GCGGcGGCGCGGAGg -3' miRNA: 3'- agUUUGCGCUGCaUGCC-CCGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 107819 | 0.82 | 0.136691 |
Target: 5'- -aAAGCGCGGCG-GCGGcGGCGCGGAGg -3' miRNA: 3'- agUUUGCGCUGCaUGCC-CCGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 32017 | 0.8 | 0.190347 |
Target: 5'- -gGAGCGCGAagcuccgGCGGGGCGCGGGGa -3' miRNA: 3'- agUUUGCGCUgca----UGCCCCGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 134830 | 0.8 | 0.190347 |
Target: 5'- -gGAGCGCGAagcuccgGCGGGGCGCGGGGa -3' miRNA: 3'- agUUUGCGCUgca----UGCCCCGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 34408 | 0.79 | 0.215506 |
Target: 5'- gCAGACGCGGCGcugGGGGCgGCGGAAg -3' miRNA: 3'- aGUUUGCGCUGCaugCCCCG-CGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 102995 | 0.79 | 0.226343 |
Target: 5'- cCGu-CGCGGCGUGCGcGGGCGCGGc- -3' miRNA: 3'- aGUuuGCGCUGCAUGC-CCCGCGCCuu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 121357 | 0.77 | 0.274368 |
Target: 5'- uUCu-GCGCGGCGgGCGGGGUGgGGAGc -3' miRNA: 3'- -AGuuUGCGCUGCaUGCCCCGCgCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 95104 | 0.77 | 0.274368 |
Target: 5'- -gGGGCGCGA--UugGGGGCGCGGAc -3' miRNA: 3'- agUUUGCGCUgcAugCCCCGCGCCUu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 31217 | 0.77 | 0.287585 |
Target: 5'- -aGGGCGCGGCGUgggcgcgcgaaaGCGGGGCGCgcccGGAAa -3' miRNA: 3'- agUUUGCGCUGCA------------UGCCCCGCG----CCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 54533 | 0.76 | 0.337761 |
Target: 5'- gCAAcCGCGGCGgggGCgGGGGCGgGGAAg -3' miRNA: 3'- aGUUuGCGCUGCa--UG-CCCCGCgCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 19738 | 0.75 | 0.35322 |
Target: 5'- cCGGACGCGgcgggccgcuuaGCGggaagGCGGGGUGCGGGc -3' miRNA: 3'- aGUUUGCGC------------UGCa----UGCCCCGCGCCUu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 85989 | 0.75 | 0.385612 |
Target: 5'- gCAGACGCGGCGcggcaacaacUcaaaaaagGCGGGGCGCGGc- -3' miRNA: 3'- aGUUUGCGCUGC----------A--------UGCCCCGCGCCuu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 66332 | 0.74 | 0.394011 |
Target: 5'- ----cUGCGGCGggUGGGGCGCGGGc -3' miRNA: 3'- aguuuGCGCUGCauGCCCCGCGCCUu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 28291 | 0.74 | 0.402528 |
Target: 5'- -aGGACGCGGCGUGCGuGGGUGUGu-- -3' miRNA: 3'- agUUUGCGCUGCAUGC-CCCGCGCcuu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 48862 | 0.73 | 0.43503 |
Target: 5'- --cGGCGCGAgGUACGGGuugaaaaacccagcGCGCGGGGg -3' miRNA: 3'- aguUUGCGCUgCAUGCCC--------------CGCGCCUU- -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 47728 | 0.73 | 0.445894 |
Target: 5'- uUCGAGCGCGGCGgGCGGGGCcccgcccGCGc-- -3' miRNA: 3'- -AGUUUGCGCUGCaUGCCCCG-------CGCcuu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 48490 | 0.73 | 0.446806 |
Target: 5'- gUCGAGCGCGGCGcgcucCGGGGCggcGCGGc- -3' miRNA: 3'- -AGUUUGCGCUGCau---GCCCCG---CGCCuu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 3991 | 0.73 | 0.465262 |
Target: 5'- cCGGGCGCG-CGgccccGCGGGGCGcCGGGc -3' miRNA: 3'- aGUUUGCGCuGCa----UGCCCCGC-GCCUu -5' |
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6395 | 3' | -56.9 | NC_001847.1 | + | 106804 | 0.73 | 0.465262 |
Target: 5'- cCGGGCGCG-CGgccccGCGGGGCGcCGGGc -3' miRNA: 3'- aGUUUGCGCuGCa----UGCCCCGC-GCCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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