miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 3' -56.9 NC_001847.1 + 11 0.67 0.791968
Target:  5'- ----cCGCG-CGg--GGGGCGCGGAGa -3'
miRNA:   3'- aguuuGCGCuGCaugCCCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 62 0.69 0.715303
Target:  5'- ----uUGCGGCGggcggggGCGGGGUGgGGGAu -3'
miRNA:   3'- aguuuGCGCUGCa------UGCCCCGCgCCUU- -5'
6395 3' -56.9 NC_001847.1 + 1406 0.68 0.754502
Target:  5'- aCucGCGCGGCGgcACGGGcaccgcgguGCGCGGGc -3'
miRNA:   3'- aGuuUGCGCUGCa-UGCCC---------CGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 2074 0.67 0.809871
Target:  5'- gCGGugGCGGCGagcgccccGCGGGGCccgcgcggcgGCGGGc -3'
miRNA:   3'- aGUUugCGCUGCa-------UGCCCCG----------CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 3856 0.66 0.850867
Target:  5'- cCAGACGUaGACGgcgcCGGGGCugcgcagcucccaGCGGAn -3'
miRNA:   3'- aGUUUGCG-CUGCau--GCCCCG-------------CGCCUu -5'
6395 3' -56.9 NC_001847.1 + 3897 0.69 0.715303
Target:  5'- gCGAGcCGUuGCGcGCGGuGGCGCGGAc -3'
miRNA:   3'- aGUUU-GCGcUGCaUGCC-CCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 3991 0.73 0.465262
Target:  5'- cCGGGCGCG-CGgccccGCGGGGCGcCGGGc -3'
miRNA:   3'- aGUUUGCGCuGCa----UGCCCCGC-GCCUu -5'
6395 3' -56.9 NC_001847.1 + 4558 0.66 0.838785
Target:  5'- --uGGCGCGGCGUggaaguggaagugguGCGGGuCGCGGu- -3'
miRNA:   3'- aguUUGCGCUGCA---------------UGCCCcGCGCCuu -5'
6395 3' -56.9 NC_001847.1 + 5006 0.82 0.136691
Target:  5'- -aAAGCGCGGCG-GCGGcGGCGCGGAGg -3'
miRNA:   3'- agUUUGCGCUGCaUGCC-CCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 5216 0.72 0.503309
Target:  5'- cUCGc-CGCGGCGgccgGCGGGGCGCGc-- -3'
miRNA:   3'- -AGUuuGCGCUGCa---UGCCCCGCGCcuu -5'
6395 3' -56.9 NC_001847.1 + 5303 0.66 0.851657
Target:  5'- gCGAGCGCGACG-GCGaGGGUccugGCaGAAg -3'
miRNA:   3'- aGUUUGCGCUGCaUGC-CCCG----CGcCUU- -5'
6395 3' -56.9 NC_001847.1 + 6955 0.68 0.754502
Target:  5'- cCAGGCGCGGgGUcGCGGcGGCGCu--- -3'
miRNA:   3'- aGUUUGCGCUgCA-UGCC-CCGCGccuu -5'
6395 3' -56.9 NC_001847.1 + 7590 0.7 0.62381
Target:  5'- cUCGGGCGCGGCuggauugaUGCGGGGUGgGGu- -3'
miRNA:   3'- -AGUUUGCGCUGc-------AUGCCCCGCgCCuu -5'
6395 3' -56.9 NC_001847.1 + 7725 0.72 0.493665
Target:  5'- uUCAGGCGCa--GgGCGcGGGCGCGGAGg -3'
miRNA:   3'- -AGUUUGCGcugCaUGC-CCCGCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 8100 0.69 0.664769
Target:  5'- aUCGgcGACGCGGCGccaGCGcaGGCGCGGGg -3'
miRNA:   3'- -AGU--UUGCGCUGCa--UGCc-CCGCGCCUu -5'
6395 3' -56.9 NC_001847.1 + 8603 0.68 0.735082
Target:  5'- cCAGGgGCGGCGcucgGCcgGGGGCGgGGGGa -3'
miRNA:   3'- aGUUUgCGCUGCa---UG--CCCCGCgCCUU- -5'
6395 3' -56.9 NC_001847.1 + 10613 0.67 0.782796
Target:  5'- gCAGACGCGGuagugggcgccaUGUACcuagcggugccuGGGGaCGCGGAGc -3'
miRNA:   3'- aGUUUGCGCU------------GCAUG------------CCCC-GCGCCUU- -5'
6395 3' -56.9 NC_001847.1 + 10863 0.69 0.695239
Target:  5'- -gAGGCGCGGCGgGCGcGGGCGCc--- -3'
miRNA:   3'- agUUUGCGCUGCaUGC-CCCGCGccuu -5'
6395 3' -56.9 NC_001847.1 + 11136 0.66 0.82628
Target:  5'- cUUGGACGCGGCGgagcUGCGGcggcuaaacuaccGGCGuCGGGAg -3'
miRNA:   3'- -AGUUUGCGCUGC----AUGCC-------------CCGC-GCCUU- -5'
6395 3' -56.9 NC_001847.1 + 12369 0.66 0.851657
Target:  5'- -gGAGCGuCGGCGgcugcggccuCGGGGCGCGu-- -3'
miRNA:   3'- agUUUGC-GCUGCau--------GCCCCGCGCcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.