miRNA display CGI


Results 1 - 20 of 1656 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6395 5' -62.6 NC_001847.1 + 35993 0.65 0.614794
Target:  5'- gGCgCCACaaGGCGCGCGgauagcgcagaauCCAUCuuggcugagcgguGCCGCg -3'
miRNA:   3'- aCG-GGUGc-UCGCGCGC-------------GGUAG-------------CGGCG- -5'
6395 5' -62.6 NC_001847.1 + 69546 0.66 0.610852
Target:  5'- cGCCC-CGGGCguggauGCGCGUgugccuggggggccaCGUgGCCGUg -3'
miRNA:   3'- aCGGGuGCUCG------CGCGCG---------------GUAgCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 73137 0.66 0.607897
Target:  5'- gUGCUCGCGgaccuggaggaGGCgGCGCGCCGggcggaggaggcggaCGCgGCg -3'
miRNA:   3'- -ACGGGUGC-----------UCG-CGCGCGGUa--------------GCGgCG- -5'
6395 5' -62.6 NC_001847.1 + 22395 0.66 0.606912
Target:  5'- cGCCCgggccgcgGCGAGCGUGC----UCGuCCGCg -3'
miRNA:   3'- aCGGG--------UGCUCGCGCGcgguAGC-GGCG- -5'
6395 5' -62.6 NC_001847.1 + 15135 0.66 0.606912
Target:  5'- cGCUCAccCGGGCaGCGCGCUguaguugacGUUGCCa- -3'
miRNA:   3'- aCGGGU--GCUCG-CGCGCGG---------UAGCGGcg -5'
6395 5' -62.6 NC_001847.1 + 11398 0.66 0.606912
Target:  5'- cUGCUauCAUGcAGCGcCGcCGCCGaUGCCGCc -3'
miRNA:   3'- -ACGG--GUGC-UCGC-GC-GCGGUaGCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 1961 0.66 0.606912
Target:  5'- cGUCCucgcCGGGCgGCGcCGCCAgCGCCu- -3'
miRNA:   3'- aCGGGu---GCUCG-CGC-GCGGUaGCGGcg -5'
6395 5' -62.6 NC_001847.1 + 113956 0.66 0.606912
Target:  5'- -uCCUACGccGC-CGgGCgCGUCGCCGCa -3'
miRNA:   3'- acGGGUGCu-CGcGCgCG-GUAGCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 109611 0.66 0.606912
Target:  5'- aGgUCGCGgagccGGUGCGCGCCAaccgCGCCu- -3'
miRNA:   3'- aCgGGUGC-----UCGCGCGCGGUa---GCGGcg -5'
6395 5' -62.6 NC_001847.1 + 107107 0.66 0.606912
Target:  5'- aGCgCCGCGucuGGCGUGUGCaggCGCuCGUa -3'
miRNA:   3'- aCG-GGUGC---UCGCGCGCGguaGCG-GCG- -5'
6395 5' -62.6 NC_001847.1 + 29976 0.66 0.606912
Target:  5'- cGCCgACGcGGC-CGgGCCggCGCgGCg -3'
miRNA:   3'- aCGGgUGC-UCGcGCgCGGuaGCGgCG- -5'
6395 5' -62.6 NC_001847.1 + 36968 0.66 0.606912
Target:  5'- cUGCCUAgaggacUGGGCGCGcCGCgGcgUGCUGCu -3'
miRNA:   3'- -ACGGGU------GCUCGCGC-GCGgUa-GCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 37760 0.66 0.606912
Target:  5'- gUGCCCAU--GCGCaGCGCguUCGCgaucaGCu -3'
miRNA:   3'- -ACGGGUGcuCGCG-CGCGguAGCGg----CG- -5'
6395 5' -62.6 NC_001847.1 + 47381 0.66 0.606912
Target:  5'- gGCCCgACGAGCuCGa-CgAUCGCCGg -3'
miRNA:   3'- aCGGG-UGCUCGcGCgcGgUAGCGGCg -5'
6395 5' -62.6 NC_001847.1 + 71013 0.66 0.606912
Target:  5'- aUGUCCaguacgGCGGccGCGCacGCGUCuggCGCCGCg -3'
miRNA:   3'- -ACGGG------UGCU--CGCG--CGCGGua-GCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 84565 0.66 0.606912
Target:  5'- cGCuCCAgGuagaacAGCauGCGCGCCAgcaGCUGCg -3'
miRNA:   3'- aCG-GGUgC------UCG--CGCGCGGUag-CGGCG- -5'
6395 5' -62.6 NC_001847.1 + 115110 0.66 0.606912
Target:  5'- cGCCCA-GGGCgGCG-GCCGcaggGCCGCc -3'
miRNA:   3'- aCGGGUgCUCG-CGCgCGGUag--CGGCG- -5'
6395 5' -62.6 NC_001847.1 + 116924 0.66 0.606912
Target:  5'- cGCgCACGAcCGCcgagagacCGCCAgcccgagaccUCGCCGCg -3'
miRNA:   3'- aCGgGUGCUcGCGc-------GCGGU----------AGCGGCG- -5'
6395 5' -62.6 NC_001847.1 + 131183 0.66 0.606912
Target:  5'- gGCCCACcucGCGCugGCGCUGUgGgUCGCg -3'
miRNA:   3'- aCGGGUGcu-CGCG--CGCGGUAgC-GGCG- -5'
6395 5' -62.6 NC_001847.1 + 77373 0.66 0.606912
Target:  5'- aGCCCgGCGAGCaccagcagccccGUG-GCCAgcgCGCCGa -3'
miRNA:   3'- aCGGG-UGCUCG------------CGCgCGGUa--GCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.