miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 5' -55.5 NC_001847.1 + 71871 0.66 0.901882
Target:  5'- aAGCGGCCG-CGaGcGCGCGGCccGUUGu -3'
miRNA:   3'- aUUGCUGGUaGC-C-CGCGCUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 60737 0.66 0.88144
Target:  5'- cGGCGGCCcgCGcGcGCGCGGCGgccGCg- -3'
miRNA:   3'- aUUGCUGGuaGC-C-CGCGCUGUa--CGac -5'
6401 5' -55.5 NC_001847.1 + 11560 0.66 0.88144
Target:  5'- -uGCGcCCAgCGGGUGCGGC-UGCc- -3'
miRNA:   3'- auUGCuGGUaGCCCGCGCUGuACGac -5'
6401 5' -55.5 NC_001847.1 + 53426 0.66 0.87416
Target:  5'- gGAUGAUggCGUCGGcGCGCG-CGUGCc- -3'
miRNA:   3'- aUUGCUG--GUAGCC-CGCGCuGUACGac -5'
6401 5' -55.5 NC_001847.1 + 96827 0.66 0.87416
Target:  5'- cGGCGACCGcgCGGGCGuUGGCuacacgGUUGc -3'
miRNA:   3'- aUUGCUGGUa-GCCCGC-GCUGua----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 68836 0.66 0.87416
Target:  5'- gGGCG-CCGcgaagagcUCGGGCGCGaggcggcgGCGUGCg- -3'
miRNA:   3'- aUUGCuGGU--------AGCCCGCGC--------UGUACGac -5'
6401 5' -55.5 NC_001847.1 + 67244 0.66 0.87416
Target:  5'- gAGCGACCAcUGGGC-CGGCAUcgacgaaacGCUa -3'
miRNA:   3'- aUUGCUGGUaGCCCGcGCUGUA---------CGAc -5'
6401 5' -55.5 NC_001847.1 + 106695 0.66 0.87416
Target:  5'- cGGCGGCCAUa-GGCacuuuccaguugGCGGCGUGCg- -3'
miRNA:   3'- aUUGCUGGUAgcCCG------------CGCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 30510 0.66 0.873419
Target:  5'- gGGCGcGCCGgacgugagcgcgcUCGGcGCGCagGGCGUGCUGc -3'
miRNA:   3'- aUUGC-UGGU-------------AGCC-CGCG--CUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 125574 0.66 0.88144
Target:  5'- -cGCGGCCG-CGGGCG--GCggGCUGg -3'
miRNA:   3'- auUGCUGGUaGCCCGCgcUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 70249 0.66 0.88849
Target:  5'- gGGCGGgCggCGGGCGCGcgGCGuUGCUc -3'
miRNA:   3'- aUUGCUgGuaGCCCGCGC--UGU-ACGAc -5'
6401 5' -55.5 NC_001847.1 + 79396 0.66 0.88849
Target:  5'- -cACGGCCGcgCGGGCGCGAgCcgGa-- -3'
miRNA:   3'- auUGCUGGUa-GCCCGCGCU-GuaCgac -5'
6401 5' -55.5 NC_001847.1 + 86813 0.66 0.901882
Target:  5'- gGACGGCaagcgCGGGCGgugcacguguaCGGCGUGCg- -3'
miRNA:   3'- aUUGCUGgua--GCCCGC-----------GCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 74161 0.66 0.895305
Target:  5'- cGACGGCgCcgUGGGCGCGcGCA-GCg- -3'
miRNA:   3'- aUUGCUG-GuaGCCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 66694 0.66 0.895305
Target:  5'- --cCGGCCG-CGGGCGCGGaccucUGCg- -3'
miRNA:   3'- auuGCUGGUaGCCCGCGCUgu---ACGac -5'
6401 5' -55.5 NC_001847.1 + 5223 0.66 0.895305
Target:  5'- cGGCGGCCGgcgGGGCGCGcGCG-GCa- -3'
miRNA:   3'- aUUGCUGGUag-CCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 86489 0.66 0.895305
Target:  5'- gGACGACgAggcugCGGGgGCGGCG-GCg- -3'
miRNA:   3'- aUUGCUGgUa----GCCCgCGCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 16661 0.66 0.895305
Target:  5'- gUGGCGGCg--CGGGCGCGucgcGCAgccuugGCUGc -3'
miRNA:   3'- -AUUGCUGguaGCCCGCGC----UGUa-----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 61058 0.66 0.889182
Target:  5'- -cGCGGCCAUCagccccagggugucuGGCGCGACGccGUUGa -3'
miRNA:   3'- auUGCUGGUAGc--------------CCGCGCUGUa-CGAC- -5'
6401 5' -55.5 NC_001847.1 + 76743 0.66 0.88849
Target:  5'- gAAgGACgGUCGGGCGCucgGGCGggggGCa- -3'
miRNA:   3'- aUUgCUGgUAGCCCGCG---CUGUa---CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.