miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 5' -55.5 NC_001847.1 + 88842 1.06 0.004166
Target:  5'- gUAACGACCAUCGGGCGCGACAUGCUGc -3'
miRNA:   3'- -AUUGCUGGUAGCCCGCGCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 15560 0.79 0.254123
Target:  5'- -cGCGGCCGUCGGGcCGCGGCcgccGCUGc -3'
miRNA:   3'- auUGCUGGUAGCCC-GCGCUGua--CGAC- -5'
6401 5' -55.5 NC_001847.1 + 118982 0.78 0.286688
Target:  5'- cGACGAgCGcggCGGcGUGCGACAUGCUGg -3'
miRNA:   3'- aUUGCUgGUa--GCC-CGCGCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 26614 0.76 0.360632
Target:  5'- cUGACGGCCAcgUGGGCGCGAaagcccuCGUGCUc -3'
miRNA:   3'- -AUUGCUGGUa-GCCCGCGCU-------GUACGAc -5'
6401 5' -55.5 NC_001847.1 + 36006 0.76 0.386365
Target:  5'- aGGCGGCCG-CGGGCGUGG--UGCUGg -3'
miRNA:   3'- aUUGCUGGUaGCCCGCGCUguACGAC- -5'
6401 5' -55.5 NC_001847.1 + 118081 0.74 0.467551
Target:  5'- ---gGACCGUCGGGCucuuuagcgaaaGCGACAUGUUc -3'
miRNA:   3'- auugCUGGUAGCCCG------------CGCUGUACGAc -5'
6401 5' -55.5 NC_001847.1 + 88816 0.74 0.467551
Target:  5'- -cGCGGCCcgCGGGCG-GcCGUGCUGc -3'
miRNA:   3'- auUGCUGGuaGCCCGCgCuGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 58672 0.74 0.477112
Target:  5'- -uGCGGCgGUUGGGCggGCGGCAgGCUGg -3'
miRNA:   3'- auUGCUGgUAGCCCG--CGCUGUaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 73722 0.74 0.477112
Target:  5'- -cGCGGCCG-CGGGCGUcgagGGCcgGCUGg -3'
miRNA:   3'- auUGCUGGUaGCCCGCG----CUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 37814 0.73 0.496518
Target:  5'- -cGCGGCCGggCGGGCGCGACGccgacgcgccUGCc- -3'
miRNA:   3'- auUGCUGGUa-GCCCGCGCUGU----------ACGac -5'
6401 5' -55.5 NC_001847.1 + 116163 0.73 0.496518
Target:  5'- cUGGCGGCCG-CGGGCGCcGCGgccgcGCUGg -3'
miRNA:   3'- -AUUGCUGGUaGCCCGCGcUGUa----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 8708 0.73 0.536334
Target:  5'- cGACGGCCAcggcuggUGGGCGgGGCAUGUg- -3'
miRNA:   3'- aUUGCUGGUa------GCCCGCgCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 103001 0.72 0.546468
Target:  5'- cGGCGugCG-CGGGCGCGGCG-GCg- -3'
miRNA:   3'- aUUGCugGUaGCCCGCGCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 33616 0.72 0.546468
Target:  5'- gGACGcCCuggcgaCGGGCGCGGCG-GCUGa -3'
miRNA:   3'- aUUGCuGGua----GCCCGCGCUGUaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 70465 0.72 0.546468
Target:  5'- -uGCGACaCGcgCGGGCGCccgguggauGGCGUGCUGg -3'
miRNA:   3'- auUGCUG-GUa-GCCCGCG---------CUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 133492 0.72 0.556661
Target:  5'- --cCGGCCGUCGGGCagGCGcACGUGUa- -3'
miRNA:   3'- auuGCUGGUAGCCCG--CGC-UGUACGac -5'
6401 5' -55.5 NC_001847.1 + 30679 0.72 0.556661
Target:  5'- --cCGGCCGUCGGGCagGCGcACGUGUa- -3'
miRNA:   3'- auuGCUGGUAGCCCG--CGC-UGUACGac -5'
6401 5' -55.5 NC_001847.1 + 36965 0.72 0.577204
Target:  5'- -uGCGGCCAgcgCGGGCGcCGGCGaGCg- -3'
miRNA:   3'- auUGCUGGUa--GCCCGC-GCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 72766 0.72 0.577204
Target:  5'- ---aGACgCGUCGGGCggcGCGGCGUGcCUGg -3'
miRNA:   3'- auugCUG-GUAGCCCG---CGCUGUAC-GAC- -5'
6401 5' -55.5 NC_001847.1 + 100934 0.72 0.58754
Target:  5'- -cGCGuCCAaaaacgcaaacUCGGGCGgGACGUGCg- -3'
miRNA:   3'- auUGCuGGU-----------AGCCCGCgCUGUACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.