miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 5' -55.5 NC_001847.1 + 15560 0.79 0.254123
Target:  5'- -cGCGGCCGUCGGGcCGCGGCcgccGCUGc -3'
miRNA:   3'- auUGCUGGUAGCCC-GCGCUGua--CGAC- -5'
6401 5' -55.5 NC_001847.1 + 53817 0.72 0.597909
Target:  5'- aGGCGugUcgCGGGCGCGGCuggcgGCg- -3'
miRNA:   3'- aUUGCugGuaGCCCGCGCUGua---CGac -5'
6401 5' -55.5 NC_001847.1 + 40522 0.71 0.63957
Target:  5'- cGGCGGCUgcgCGcgacGCGCGACGUGCUGc -3'
miRNA:   3'- aUUGCUGGua-GCc---CGCGCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 30054 0.66 0.901882
Target:  5'- cGACGuuGCCGgcgCGguGGCGCGGCugggaGUGCUGu -3'
miRNA:   3'- aUUGC--UGGUa--GC--CCGCGCUG-----UACGAC- -5'
6401 5' -55.5 NC_001847.1 + 88816 0.74 0.467551
Target:  5'- -cGCGGCCcgCGGGCG-GcCGUGCUGc -3'
miRNA:   3'- auUGCUGGuaGCCCGCgCuGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 118081 0.74 0.467551
Target:  5'- ---gGACCGUCGGGCucuuuagcgaaaGCGACAUGUUc -3'
miRNA:   3'- auugCUGGUAGCCCG------------CGCUGUACGAc -5'
6401 5' -55.5 NC_001847.1 + 73722 0.74 0.477112
Target:  5'- -cGCGGCCG-CGGGCGUcgagGGCcgGCUGg -3'
miRNA:   3'- auUGCUGGUaGCCCGCG----CUGuaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 37814 0.73 0.496518
Target:  5'- -cGCGGCCGggCGGGCGCGACGccgacgcgccUGCc- -3'
miRNA:   3'- auUGCUGGUa-GCCCGCGCUGU----------ACGac -5'
6401 5' -55.5 NC_001847.1 + 70465 0.72 0.546468
Target:  5'- -uGCGACaCGcgCGGGCGCccgguggauGGCGUGCUGg -3'
miRNA:   3'- auUGCUG-GUa-GCCCGCG---------CUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 90355 0.72 0.58754
Target:  5'- cGGCG-CUuUCGGGCgGCGACcUGCUGg -3'
miRNA:   3'- aUUGCuGGuAGCCCG-CGCUGuACGAC- -5'
6401 5' -55.5 NC_001847.1 + 36965 0.72 0.577204
Target:  5'- -uGCGGCCAgcgCGGGCGcCGGCGaGCg- -3'
miRNA:   3'- auUGCUGGUa--GCCCGC-GCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 33616 0.72 0.546468
Target:  5'- gGACGcCCuggcgaCGGGCGCGGCG-GCUGa -3'
miRNA:   3'- aUUGCuGGua----GCCCGCGCUGUaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 118982 0.78 0.286688
Target:  5'- cGACGAgCGcggCGGcGUGCGACAUGCUGg -3'
miRNA:   3'- aUUGCUgGUa--GCC-CGCGCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 17888 0.72 0.58754
Target:  5'- --uCGGgCGgggCGGGCgGCGGCGUGCUGu -3'
miRNA:   3'- auuGCUgGUa--GCCCG-CGCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 26614 0.76 0.360632
Target:  5'- cUGACGGCCAcgUGGGCGCGAaagcccuCGUGCUc -3'
miRNA:   3'- -AUUGCUGGUa-GCCCGCGCU-------GUACGAc -5'
6401 5' -55.5 NC_001847.1 + 8708 0.73 0.536334
Target:  5'- cGACGGCCAcggcuggUGGGCGgGGCAUGUg- -3'
miRNA:   3'- aUUGCUGGUa------GCCCGCgCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 83094 0.72 0.58754
Target:  5'- -cACGGCCuUCGGGCGCGAUAa---- -3'
miRNA:   3'- auUGCUGGuAGCCCGCGCUGUacgac -5'
6401 5' -55.5 NC_001847.1 + 31292 0.71 0.608305
Target:  5'- --cCGACCAggCGGGCGCGGgGagcgggcucUGCUGc -3'
miRNA:   3'- auuGCUGGUa-GCCCGCGCUgU---------ACGAC- -5'
6401 5' -55.5 NC_001847.1 + 36006 0.76 0.386365
Target:  5'- aGGCGGCCG-CGGGCGUGG--UGCUGg -3'
miRNA:   3'- aUUGCUGGUaGCCCGCGCUguACGAC- -5'
6401 5' -55.5 NC_001847.1 + 58672 0.74 0.477112
Target:  5'- -uGCGGCgGUUGGGCggGCGGCAgGCUGg -3'
miRNA:   3'- auUGCUGgUAGCCCG--CGCUGUaCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.