miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 5' -55.5 NC_001847.1 + 2201 0.67 0.842852
Target:  5'- -cGCGACC-UCGGG-GCGGCAguagGCc- -3'
miRNA:   3'- auUGCUGGuAGCCCgCGCUGUa---CGac -5'
6401 5' -55.5 NC_001847.1 + 3773 0.69 0.742017
Target:  5'- --uCGAgCAgccCGGGCGgGAUGUGCUGc -3'
miRNA:   3'- auuGCUgGUa--GCCCGCgCUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 4277 0.69 0.742017
Target:  5'- uUGGCGGCCA-CGaGGCGCGcGCcgGCg- -3'
miRNA:   3'- -AUUGCUGGUaGC-CCGCGC-UGuaCGac -5'
6401 5' -55.5 NC_001847.1 + 4541 0.67 0.858931
Target:  5'- cGGCGGCCGcccgCGGGUggcGCGGCGUGg-- -3'
miRNA:   3'- aUUGCUGGUa---GCCCG---CGCUGUACgac -5'
6401 5' -55.5 NC_001847.1 + 4778 0.66 0.901882
Target:  5'- --uCGGCgAagGGGCGUuccagcaugacGGCAUGCUGg -3'
miRNA:   3'- auuGCUGgUagCCCGCG-----------CUGUACGAC- -5'
6401 5' -55.5 NC_001847.1 + 4993 0.67 0.850995
Target:  5'- cGGCGGCCG-CGGcaaaGCGCGGCGgcgGCg- -3'
miRNA:   3'- aUUGCUGGUaGCC----CGCGCUGUa--CGac -5'
6401 5' -55.5 NC_001847.1 + 5223 0.66 0.895305
Target:  5'- cGGCGGCCGgcgGGGCGCGcGCG-GCa- -3'
miRNA:   3'- aUUGCUGGUag-CCCGCGC-UGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 6687 0.69 0.751873
Target:  5'- cGGCGGCCGgcCGGGCGCG-CGcGCa- -3'
miRNA:   3'- aUUGCUGGUa-GCCCGCGCuGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 7252 0.69 0.751873
Target:  5'- --gUGGCUGUgCGGGCGCGGCGgggGCa- -3'
miRNA:   3'- auuGCUGGUA-GCCCGCGCUGUa--CGac -5'
6401 5' -55.5 NC_001847.1 + 8358 0.66 0.87416
Target:  5'- cGAuCGACCAaacacguaGGGCGCGGCA-GCg- -3'
miRNA:   3'- aUU-GCUGGUag------CCCGCGCUGUaCGac -5'
6401 5' -55.5 NC_001847.1 + 8636 0.67 0.850995
Target:  5'- gAGCGGCCGcugcggacUCGGGCGCccaGACGaugGCg- -3'
miRNA:   3'- aUUGCUGGU--------AGCCCGCG---CUGUa--CGac -5'
6401 5' -55.5 NC_001847.1 + 8708 0.73 0.536334
Target:  5'- cGACGGCCAcggcuggUGGGCGgGGCAUGUg- -3'
miRNA:   3'- aUUGCUGGUa------GCCCGCgCUGUACGac -5'
6401 5' -55.5 NC_001847.1 + 11560 0.66 0.88144
Target:  5'- -uGCGcCCAgCGGGUGCGGC-UGCc- -3'
miRNA:   3'- auUGCuGGUaGCCCGCGCUGuACGac -5'
6401 5' -55.5 NC_001847.1 + 12609 0.68 0.808374
Target:  5'- cAGCGACCGgcaGGGUccggGCGGCAcUGCUc -3'
miRNA:   3'- aUUGCUGGUag-CCCG----CGCUGU-ACGAc -5'
6401 5' -55.5 NC_001847.1 + 13730 0.67 0.866655
Target:  5'- cAGCGGCCuuccUGGGCGUGGg--GCUGa -3'
miRNA:   3'- aUUGCUGGua--GCCCGCGCUguaCGAC- -5'
6401 5' -55.5 NC_001847.1 + 14661 0.67 0.842852
Target:  5'- cUGACGugaaCAUCGacGGCGCGGCcgGCg- -3'
miRNA:   3'- -AUUGCug--GUAGC--CCGCGCUGuaCGac -5'
6401 5' -55.5 NC_001847.1 + 15410 0.66 0.88849
Target:  5'- gGGCGGCCc-UGGaGCGCGGCAcggcgaGCUGg -3'
miRNA:   3'- aUUGCUGGuaGCC-CGCGCUGUa-----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 15560 0.79 0.254123
Target:  5'- -cGCGGCCGUCGGGcCGCGGCcgccGCUGc -3'
miRNA:   3'- auUGCUGGUAGCCC-GCGCUGua--CGAC- -5'
6401 5' -55.5 NC_001847.1 + 16661 0.66 0.895305
Target:  5'- gUGGCGGCg--CGGGCGCGucgcGCAgccuugGCUGc -3'
miRNA:   3'- -AUUGCUGguaGCCCGCGC----UGUa-----CGAC- -5'
6401 5' -55.5 NC_001847.1 + 17888 0.72 0.58754
Target:  5'- --uCGGgCGgggCGGGCgGCGGCGUGCUGu -3'
miRNA:   3'- auuGCUgGUa--GCCCG-CGCUGUACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.