miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 3' -63.9 NC_001847.1 + 123569 0.66 0.558657
Target:  5'- --gGGCCGGGGccGCCgCgaGCGGG-GCc -3'
miRNA:   3'- gcaCCGGCUCCucCGG-Ga-CGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 105111 0.66 0.558657
Target:  5'- gCGgGGCCGccGGGcggcauGGGCCCcagcacgcggGCGGGcAGCg -3'
miRNA:   3'- -GCaCCGGC--UCC------UCCGGGa---------CGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 128745 0.66 0.558657
Target:  5'- gGUGGCCGuGGAgagaauggagcGGCUaggGCcaaaGGGGGCc -3'
miRNA:   3'- gCACCGGCuCCU-----------CCGGga-CG----CCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 54424 0.66 0.558657
Target:  5'- -uUGGCCucGGcGGCCCggGCagagacgagGGGGGCg -3'
miRNA:   3'- gcACCGGcuCCuCCGGGa-CG---------CCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 2298 0.66 0.558657
Target:  5'- gCGgGGCCGccGGGcggcauGGGCCCcagcacgcggGCGGGcAGCg -3'
miRNA:   3'- -GCaCCGGC--UCC------UCCGGGa---------CGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 47553 0.66 0.549101
Target:  5'- aCGgcgGGCgCGGGGA-GCCCgGCGGccGCg -3'
miRNA:   3'- -GCa--CCG-GCUCCUcCGGGaCGCCcuCG- -5'
6403 3' -63.9 NC_001847.1 + 33522 0.66 0.549101
Target:  5'- gCGccGCCGcGGAGGCgCCgggcGCGGGcGCc -3'
miRNA:   3'- -GCacCGGCuCCUCCG-GGa---CGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 25933 0.66 0.549101
Target:  5'- gGUGGCCGuGGAgagauggagcGGCUaggGCcaaaGGGGGCc -3'
miRNA:   3'- gCACCGGCuCCU----------CCGGga-CG----CCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 73166 0.66 0.549101
Target:  5'- cCG-GGCgGAGGAGGCggacGCGGcGGCg -3'
miRNA:   3'- -GCaCCGgCUCCUCCGgga-CGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 100804 0.66 0.548149
Target:  5'- --cGGCCGGGGuuGCCaUUGCGGccgaccucggcccGGGCg -3'
miRNA:   3'- gcaCCGGCUCCucCGG-GACGCC-------------CUCG- -5'
6403 3' -63.9 NC_001847.1 + 108530 0.66 0.539597
Target:  5'- gGUGcGCCuGGGAGGgcuuaCCUGCccgcGGGGCg -3'
miRNA:   3'- gCAC-CGGcUCCUCCg----GGACGc---CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 101159 0.66 0.539597
Target:  5'- --gGGCCGGGGccgGGGCCgggGuCGGGGcGCg -3'
miRNA:   3'- gcaCCGGCUCC---UCCGGga-C-GCCCU-CG- -5'
6403 3' -63.9 NC_001847.1 + 128195 0.66 0.539597
Target:  5'- gCGgcagGGCgGAGGGGGaCC-GCGGaAGCa -3'
miRNA:   3'- -GCa---CCGgCUCCUCCgGGaCGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 5717 0.66 0.539597
Target:  5'- gGUGcGCCuGGGAGGgcuuaCCUGCccgcGGGGCg -3'
miRNA:   3'- gCAC-CGGcUCCUCCg----GGACGc---CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 25382 0.66 0.539597
Target:  5'- gCGgcagGGCgGAGGGGGaCC-GCGGaAGCa -3'
miRNA:   3'- -GCa---CCGgCUCCUCCgGGaCGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 92790 0.66 0.539597
Target:  5'- gCGcUGGCCaccGAGGAcguGGCCg-GCuGGAGCg -3'
miRNA:   3'- -GC-ACCGG---CUCCU---CCGGgaCGcCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 95169 0.66 0.539597
Target:  5'- gCGgggGGCgCGAucGGGGGCgCgauCGGGGGCg -3'
miRNA:   3'- -GCa--CCG-GCU--CCUCCGgGac-GCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 46231 0.66 0.530149
Target:  5'- --aGaGCCGcgcgcgcgcaaGGGAGccGCCCccgGCGGGAGCc -3'
miRNA:   3'- gcaC-CGGC-----------UCCUC--CGGGa--CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 117804 0.66 0.530149
Target:  5'- -cUGGaCCGAGGGcucgguguGGCCCUGCaccacaaGAGCg -3'
miRNA:   3'- gcACC-GGCUCCU--------CCGGGACGcc-----CUCG- -5'
6403 3' -63.9 NC_001847.1 + 34169 0.66 0.530149
Target:  5'- --aGGCgGcuGAGGCgCUGCGGGccgggGGCg -3'
miRNA:   3'- gcaCCGgCucCUCCGgGACGCCC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.