miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6411 3' -54.7 NC_001847.1 + 134777 0.7 0.768442
Target:  5'- -cGCGGCGCGcgGGgcgggCCCCggGGCGCGa -3'
miRNA:   3'- caUGCUGCGCa-UCaa---GGGG--UCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 134254 0.71 0.688661
Target:  5'- -gGCGGcCGCGgcGg-CCCCGGCGCGg -3'
miRNA:   3'- caUGCU-GCGCauCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 134192 0.66 0.92924
Target:  5'- gGUGcCGGCGC--AGUcgUCCCCGgGCGCGg -3'
miRNA:   3'- -CAU-GCUGCGcaUCA--AGGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 133393 0.69 0.814553
Target:  5'- -cGCGGCGCGguggAGUaCCUCuGCGCGc -3'
miRNA:   3'- caUGCUGCGCa---UCAaGGGGuCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 132229 0.68 0.864175
Target:  5'- -gGCGGCGCGgaccGUggCCCCGcucGCGCGg -3'
miRNA:   3'- caUGCUGCGCau--CAa-GGGGU---CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 132140 0.68 0.831863
Target:  5'- -cGCGACGCGguggAGcgcgcgcggCUCCAGCGCGc -3'
miRNA:   3'- caUGCUGCGCa---UCaa-------GGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 131319 0.66 0.92924
Target:  5'- -gGCGAgGCGUGG--CCCggCAGCGCGc -3'
miRNA:   3'- caUGCUgCGCAUCaaGGG--GUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 130843 0.66 0.92924
Target:  5'- -gGCGGCGCGcgAGUaCCaaggcgCCGGCGCGc -3'
miRNA:   3'- caUGCUGCGCa-UCAaGG------GGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 124049 0.68 0.848424
Target:  5'- -cACGACGcCGUGGUUgaaCAGCACGg -3'
miRNA:   3'- caUGCUGC-GCAUCAAgggGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 122020 0.66 0.928175
Target:  5'- -gGCGGCGCGgcGccgcccgcgcgCCCCGGcCGCGa -3'
miRNA:   3'- caUGCUGCGCauCaa---------GGGGUC-GUGCa -5'
6411 3' -54.7 NC_001847.1 + 121225 0.7 0.749055
Target:  5'- -cGCGGCGCGgcaccgAGcgCCCCAGCcacCGUc -3'
miRNA:   3'- caUGCUGCGCa-----UCaaGGGGUCGu--GCA- -5'
6411 3' -54.7 NC_001847.1 + 120777 0.66 0.923819
Target:  5'- cUACGACcgcgcgcugGCGgcGUUCCCCgcaGGCGCc- -3'
miRNA:   3'- cAUGCUG---------CGCauCAAGGGG---UCGUGca -5'
6411 3' -54.7 NC_001847.1 + 119891 0.67 0.906083
Target:  5'- -gGCGAuCGCGUGcGUggccgccgccgCCgCCGGCGCGUa -3'
miRNA:   3'- caUGCU-GCGCAU-CAa----------GG-GGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 118434 0.66 0.92924
Target:  5'- --uCGGCGcCGUGGggCUCCuGCugGUg -3'
miRNA:   3'- cauGCUGC-GCAUCaaGGGGuCGugCA- -5'
6411 3' -54.7 NC_001847.1 + 116311 0.66 0.923819
Target:  5'- cGUGCGGCGCGcgcgAGgacgccgUgCCCAuGCGCGc -3'
miRNA:   3'- -CAUGCUGCGCa---UCa------AgGGGU-CGUGCa -5'
6411 3' -54.7 NC_001847.1 + 107922 0.66 0.92924
Target:  5'- uUGCGACcCGcagcucgAGcgCCCCGGCGCGc -3'
miRNA:   3'- cAUGCUGcGCa------UCaaGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 106760 0.68 0.87173
Target:  5'- -cGCGGCGgGggGGgcgccgUCUCCGGCGCGa -3'
miRNA:   3'- caUGCUGCgCa-UCa-----AGGGGUCGUGCa -5'
6411 3' -54.7 NC_001847.1 + 106664 0.67 0.899683
Target:  5'- -gGCGcCGCGgcG-UCCgCGGCGCGUc -3'
miRNA:   3'- caUGCuGCGCauCaAGGgGUCGUGCA- -5'
6411 3' -54.7 NC_001847.1 + 105970 0.68 0.840241
Target:  5'- -gGCGGCGCGgcGggccgCCuCCAGCGCc- -3'
miRNA:   3'- caUGCUGCGCauCaa---GG-GGUCGUGca -5'
6411 3' -54.7 NC_001847.1 + 105708 0.67 0.906083
Target:  5'- -gGCGGCGCcacg--CCCCAGCGCu- -3'
miRNA:   3'- caUGCUGCGcaucaaGGGGUCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.