miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 3' -60.2 NC_001847.1 + 106092 0.66 0.69981
Target:  5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3'
miRNA:   3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5'
6419 3' -60.2 NC_001847.1 + 100502 0.66 0.669801
Target:  5'- cGGCGcGCCGcUCGgccucGGCGCGCaGGCg -3'
miRNA:   3'- cUCGCaCGGCaAGC-----UCGCGCGgUCGa -5'
6419 3' -60.2 NC_001847.1 + 98132 0.66 0.669801
Target:  5'- -cGCG-GgCGUcagcUCGAGCGCGCC-GCc -3'
miRNA:   3'- cuCGCaCgGCA----AGCUCGCGCGGuCGa -5'
6419 3' -60.2 NC_001847.1 + 71871 0.66 0.669801
Target:  5'- aAGCG-GCCG--CGAGCGCG-CGGCc -3'
miRNA:   3'- cUCGCaCGGCaaGCUCGCGCgGUCGa -5'
6419 3' -60.2 NC_001847.1 + 46498 0.66 0.669801
Target:  5'- cAGCGUGgC---CGAGCGuUGCCAGCg -3'
miRNA:   3'- cUCGCACgGcaaGCUCGC-GCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 31321 0.66 0.669801
Target:  5'- cGGGCGgcgGCCuggUgGAGCGCgugccgccGCCGGCg -3'
miRNA:   3'- -CUCGCa--CGGca-AgCUCGCG--------CGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 14693 0.66 0.669801
Target:  5'- gGAGCGaaaggcGUCGUUCGcGaCGCGCgGGCa -3'
miRNA:   3'- -CUCGCa-----CGGCAAGCuC-GCGCGgUCGa -5'
6419 3' -60.2 NC_001847.1 + 102376 0.66 0.669801
Target:  5'- cAGCGgccgGCCGUcgCGaAGCGCcGCCcGCg -3'
miRNA:   3'- cUCGCa---CGGCAa-GC-UCGCG-CGGuCGa -5'
6419 3' -60.2 NC_001847.1 + 85664 0.66 0.669801
Target:  5'- uGGCGcgGCCGUgCuGGCGCGCaGGCg -3'
miRNA:   3'- cUCGCa-CGGCAaGcUCGCGCGgUCGa -5'
6419 3' -60.2 NC_001847.1 + 4722 0.66 0.669801
Target:  5'- -cGCGgacucgaugagGUCGUacaggUCGAGCGUGgCCAGCUc -3'
miRNA:   3'- cuCGCa----------CGGCA-----AGCUCGCGC-GGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 94961 0.66 0.669801
Target:  5'- cGGCG-GCCGUUCcgcCGCGCgCAGCc -3'
miRNA:   3'- cUCGCaCGGCAAGcucGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 79392 0.66 0.689851
Target:  5'- aGGGCacgGCCGcgCGGGCGCgaGCCGGa- -3'
miRNA:   3'- -CUCGca-CGGCaaGCUCGCG--CGGUCga -5'
6419 3' -60.2 NC_001847.1 + 106479 0.66 0.69981
Target:  5'- -cGCGcacGUCGUgcgaCGAGCGCGCaaaAGCg -3'
miRNA:   3'- cuCGCa--CGGCAa---GCUCGCGCGg--UCGa -5'
6419 3' -60.2 NC_001847.1 + 93869 0.66 0.69981
Target:  5'- cGGCGcGCUGc-UGAccGCGCGCCGGCa -3'
miRNA:   3'- cUCGCaCGGCaaGCU--CGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3279 0.66 0.69981
Target:  5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3'
miRNA:   3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5'
6419 3' -60.2 NC_001847.1 + 30371 0.66 0.69981
Target:  5'- uGGCGgcGCCGcccggCGAGgacgaGCGCCGGCg -3'
miRNA:   3'- cUCGCa-CGGCaa---GCUCg----CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 12349 0.66 0.69981
Target:  5'- uGAGCGguggGCCuggcUCGGGaGCGUCGGCg -3'
miRNA:   3'- -CUCGCa---CGGca--AGCUCgCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 79050 0.66 0.69384
Target:  5'- -cGUGUGCCagccccgcacccCGGGCGCGCuCAGCc -3'
miRNA:   3'- cuCGCACGGcaa---------GCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 120925 0.66 0.689851
Target:  5'- cGAG-G-GCgGggCGGGCGCGCgGGCg -3'
miRNA:   3'- -CUCgCaCGgCaaGCUCGCGCGgUCGa -5'
6419 3' -60.2 NC_001847.1 + 112856 0.66 0.689851
Target:  5'- cAGCGUGUCGgccUCGgcGGCGCuGCCuacGGCg -3'
miRNA:   3'- cUCGCACGGCa--AGC--UCGCG-CGG---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.