miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 3' -60.2 NC_001847.1 + 78372 1.07 0.00135
Target:  5'- cGAGCGUGCCGUUCGAGCGCGCCAGCUc -3'
miRNA:   3'- -CUCGCACGGCAAGCUCGCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 47861 0.81 0.086755
Target:  5'- -cGCGUGCUGcgCGGGCGCGCgCAGCg -3'
miRNA:   3'- cuCGCACGGCaaGCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 60027 0.8 0.098889
Target:  5'- aGAGCGUGCCGUcggccucuucgUCGGGCGCGaggCGGCg -3'
miRNA:   3'- -CUCGCACGGCA-----------AGCUCGCGCg--GUCGa -5'
6419 3' -60.2 NC_001847.1 + 31014 0.78 0.149279
Target:  5'- cGGCGuUGCCGgcgCGcGCGCGCCGGCa -3'
miRNA:   3'- cUCGC-ACGGCaa-GCuCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 104120 0.78 0.149279
Target:  5'- cGGCGuUGCCGgcgCGcGCGCGCCGGCa -3'
miRNA:   3'- cUCGC-ACGGCaa-GCuCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 30509 0.77 0.173595
Target:  5'- cGGGCGcGCCGgacgUGAGCGCGCuCGGCg -3'
miRNA:   3'- -CUCGCaCGGCaa--GCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 133322 0.77 0.173595
Target:  5'- cGGGCGcGCCGgacgUGAGCGCGCuCGGCg -3'
miRNA:   3'- -CUCGCaCGGCaa--GCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 4239 0.76 0.201381
Target:  5'- -cGCGcGCCGgcaCGAGCuGCGCCAGCa -3'
miRNA:   3'- cuCGCaCGGCaa-GCUCG-CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 47698 0.76 0.201381
Target:  5'- -cGCGggGCCGUU-GAGCGCGCgCAGCa -3'
miRNA:   3'- cuCGCa-CGGCAAgCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 91333 0.75 0.22199
Target:  5'- aAGCGgccGCCGUcgcccUCGAccgGCGCGCCGGCg -3'
miRNA:   3'- cUCGCa--CGGCA-----AGCU---CGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 61888 0.75 0.22199
Target:  5'- cGGCGUGCgCGcacggccUCGAGCGCGCCcGCg -3'
miRNA:   3'- cUCGCACG-GCa------AGCUCGCGCGGuCGa -5'
6419 3' -60.2 NC_001847.1 + 6747 0.75 0.238033
Target:  5'- cGGGCGUcgucugcggugcgGCCGgugCGAG-GCGCCAGCUg -3'
miRNA:   3'- -CUCGCA-------------CGGCaa-GCUCgCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 98564 0.74 0.246706
Target:  5'- cGGCGUGCCG-UCGGcguccagguaggcgcGCgGCGCCAGCg -3'
miRNA:   3'- cUCGCACGGCaAGCU---------------CG-CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 33965 0.74 0.256243
Target:  5'- cGAGCGcGCUGgcgcCGGGCGCGCUGGCc -3'
miRNA:   3'- -CUCGCaCGGCaa--GCUCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 44241 0.74 0.268588
Target:  5'- cGGGCGUGg-GgcUGAGCGCGCCGGCg -3'
miRNA:   3'- -CUCGCACggCaaGCUCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 11429 0.74 0.268588
Target:  5'- cGAGCGaagugcUGCCGUgCGAcccCGCGCCAGCg -3'
miRNA:   3'- -CUCGC------ACGGCAaGCUc--GCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 41566 0.74 0.268588
Target:  5'- cGAGCGcGUCGUgucCGAGCGCGCCuuaaacuuggccGGCUc -3'
miRNA:   3'- -CUCGCaCGGCAa--GCUCGCGCGG------------UCGA- -5'
6419 3' -60.2 NC_001847.1 + 35568 0.74 0.268588
Target:  5'- uGGCGUGCgCGcuUUgGAGCgGCGCCGGCg -3'
miRNA:   3'- cUCGCACG-GC--AAgCUCG-CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 44618 0.74 0.268588
Target:  5'- aGGGC--GCCGUUCagcauGCGCGCCAGCUc -3'
miRNA:   3'- -CUCGcaCGGCAAGcu---CGCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 85585 0.73 0.281408
Target:  5'- cGGC--GCCGUcgaCGGGCGCGCCGGCa -3'
miRNA:   3'- cUCGcaCGGCAa--GCUCGCGCGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.