miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 3' -60.2 NC_001847.1 + 1194 0.68 0.579007
Target:  5'- -cGCG-GCCGgcagcUCGucGgGCGCCAGCUc -3'
miRNA:   3'- cuCGCaCGGCa----AGCu-CgCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 1590 0.7 0.444956
Target:  5'- cAGCGcGCCGcUCGGGCcaGCGCgCGGCg -3'
miRNA:   3'- cUCGCaCGGCaAGCUCG--CGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 1935 0.68 0.569012
Target:  5'- cGGCG-GCCacUCGGGC-CGCCGGCg -3'
miRNA:   3'- cUCGCaCGGcaAGCUCGcGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 2806 0.68 0.55906
Target:  5'- cGAGCGcgGCCGcc--AGcCGCGCCGGCa -3'
miRNA:   3'- -CUCGCa-CGGCaagcUC-GCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 2840 0.7 0.427193
Target:  5'- cGGCGgGCUGaacagCGcGCGCGCCAGCg -3'
miRNA:   3'- cUCGCaCGGCaa---GCuCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3279 0.66 0.69981
Target:  5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3'
miRNA:   3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5'
6419 3' -60.2 NC_001847.1 + 3526 0.67 0.629406
Target:  5'- cGGGcCGUgGCCGacuacggccgCGAGCGCGgCGGCg -3'
miRNA:   3'- -CUC-GCA-CGGCaa--------GCUCGCGCgGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3558 0.68 0.55906
Target:  5'- -cGCGccGCUGcagCaGGCGCGCCAGCUg -3'
miRNA:   3'- cuCGCa-CGGCaa-GcUCGCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 3711 0.66 0.679845
Target:  5'- aGGCGcgGCaa-UCGcGCGCGCCGGCc -3'
miRNA:   3'- cUCGCa-CGgcaAGCuCGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3804 0.72 0.322765
Target:  5'- cGGCGUGCCGgcaCGGG-GCGUCGGCc -3'
miRNA:   3'- cUCGCACGGCaa-GCUCgCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 3977 0.67 0.619293
Target:  5'- aGGUGgGCCGU--GAGCaCGCCAGCg -3'
miRNA:   3'- cUCGCaCGGCAagCUCGcGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 4239 0.76 0.201381
Target:  5'- -cGCGcGCCGgcaCGAGCuGCGCCAGCa -3'
miRNA:   3'- cuCGCaCGGCaa-GCUCG-CGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 4278 0.67 0.599102
Target:  5'- uGGCG-GCCa--CGAggcGCGCGCCGGCg -3'
miRNA:   3'- cUCGCaCGGcaaGCU---CGCGCGGUCGa -5'
6419 3' -60.2 NC_001847.1 + 4722 0.66 0.669801
Target:  5'- -cGCGgacucgaugagGUCGUacaggUCGAGCGUGgCCAGCUc -3'
miRNA:   3'- cuCGCa----------CGGCA-----AGCUCGCGC-GGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 5223 0.71 0.401354
Target:  5'- cGGCG-GCCGgcgGGGCGCGCgCGGCa -3'
miRNA:   3'- cUCGCaCGGCaagCUCGCGCG-GUCGa -5'
6419 3' -60.2 NC_001847.1 + 5668 0.67 0.619293
Target:  5'- -uGCGcGCCG-UCGcGCGCGgCGGCg -3'
miRNA:   3'- cuCGCaCGGCaAGCuCGCGCgGUCGa -5'
6419 3' -60.2 NC_001847.1 + 6260 0.7 0.436022
Target:  5'- cAGCauUGCC-UUCGAGCGCGCCuuuuGCUu -3'
miRNA:   3'- cUCGc-ACGGcAAGCUCGCGCGGu---CGA- -5'
6419 3' -60.2 NC_001847.1 + 6687 0.68 0.55906
Target:  5'- cGGCG-GCCGgcCGGGCGCGCgC-GCa -3'
miRNA:   3'- cUCGCaCGGCaaGCUCGCGCG-GuCGa -5'
6419 3' -60.2 NC_001847.1 + 6747 0.75 0.238033
Target:  5'- cGGGCGUcgucugcggugcgGCCGgugCGAG-GCGCCAGCUg -3'
miRNA:   3'- -CUCGCA-------------CGGCaa-GCUCgCGCGGUCGA- -5'
6419 3' -60.2 NC_001847.1 + 7014 0.66 0.689851
Target:  5'- cGAGCG-GCCGcgCauccGCcaGCGCCAGCg -3'
miRNA:   3'- -CUCGCaCGGCaaGcu--CG--CGCGGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.