Results 1 - 20 of 247 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6419 | 3' | -60.2 | NC_001847.1 | + | 47861 | 0.81 | 0.086755 |
Target: 5'- -cGCGUGCUGcgCGGGCGCGCgCAGCg -3' miRNA: 3'- cuCGCACGGCaaGCUCGCGCG-GUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 41165 | 0.71 | 0.401354 |
Target: 5'- uGAGCGcGCgGcgCGGGCGCGCguGUUa -3' miRNA: 3'- -CUCGCaCGgCaaGCUCGCGCGguCGA- -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 34299 | 0.71 | 0.401354 |
Target: 5'- -cGCG-GCCGUcagcgaggcuUCGGGCGCGCUuGCg -3' miRNA: 3'- cuCGCaCGGCA----------AGCUCGCGCGGuCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 106092 | 0.66 | 0.69981 |
Target: 5'- -cGCG-GCCGg-CGAGCacgGCGCgCAGCUc -3' miRNA: 3'- cuCGCaCGGCaaGCUCG---CGCG-GUCGA- -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 4239 | 0.76 | 0.201381 |
Target: 5'- -cGCGcGCCGgcaCGAGCuGCGCCAGCa -3' miRNA: 3'- cuCGCaCGGCaa-GCUCG-CGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 61888 | 0.75 | 0.22199 |
Target: 5'- cGGCGUGCgCGcacggccUCGAGCGCGCCcGCg -3' miRNA: 3'- cUCGCACG-GCa------AGCUCGCGCGGuCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 33965 | 0.74 | 0.256243 |
Target: 5'- cGAGCGcGCUGgcgcCGGGCGCGCUGGCc -3' miRNA: 3'- -CUCGCaCGGCaa--GCUCGCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 44241 | 0.74 | 0.268588 |
Target: 5'- cGGGCGUGg-GgcUGAGCGCGCCGGCg -3' miRNA: 3'- -CUCGCACggCaaGCUCGCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 59019 | 0.72 | 0.345085 |
Target: 5'- aGAGCGUGCgaCGguggCGGGUGCGgCGGCg -3' miRNA: 3'- -CUCGCACG--GCaa--GCUCGCGCgGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 53366 | 0.71 | 0.384691 |
Target: 5'- uGGCG-GCCGcgggcaccgCGAGCGCGCCuGCc -3' miRNA: 3'- cUCGCaCGGCaa-------GCUCGCGCGGuCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 9508 | 0.72 | 0.352768 |
Target: 5'- cGAGCGgacccgaGCCGagCGggcGGCGCGCUAGCg -3' miRNA: 3'- -CUCGCa------CGGCaaGC---UCGCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 3804 | 0.72 | 0.322765 |
Target: 5'- cGGCGUGCCGgcaCGGG-GCGUCGGCc -3' miRNA: 3'- cUCGCACGGCaa-GCUCgCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 60027 | 0.8 | 0.098889 |
Target: 5'- aGAGCGUGCCGUcggccucuucgUCGGGCGCGaggCGGCg -3' miRNA: 3'- -CUCGCACGGCA-----------AGCUCGCGCg--GUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 41014 | 0.71 | 0.376533 |
Target: 5'- -cGuCGUGCCGUccugcaaCGGGCGCGCCgcGGCg -3' miRNA: 3'- cuC-GCACGGCAa------GCUCGCGCGG--UCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 31014 | 0.78 | 0.149279 |
Target: 5'- cGGCGuUGCCGgcgCGcGCGCGCCGGCa -3' miRNA: 3'- cUCGC-ACGGCaa-GCuCGCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 11429 | 0.74 | 0.268588 |
Target: 5'- cGAGCGaagugcUGCCGUgCGAcccCGCGCCAGCg -3' miRNA: 3'- -CUCGC------ACGGCAaGCUc--GCGCGGUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 77528 | 0.71 | 0.376533 |
Target: 5'- -cGCGUGCCug-CGAGCGCGagGGCg -3' miRNA: 3'- cuCGCACGGcaaGCUCGCGCggUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 108036 | 0.71 | 0.401354 |
Target: 5'- cGGCG-GCCGgcgGGGCGCGCgCGGCa -3' miRNA: 3'- cUCGCaCGGCaagCUCGCGCG-GUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 133322 | 0.77 | 0.173595 |
Target: 5'- cGGGCGcGCCGgacgUGAGCGCGCuCGGCg -3' miRNA: 3'- -CUCGCaCGGCaa--GCUCGCGCG-GUCGa -5' |
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6419 | 3' | -60.2 | NC_001847.1 | + | 6747 | 0.75 | 0.238033 |
Target: 5'- cGGGCGUcgucugcggugcgGCCGgugCGAG-GCGCCAGCUg -3' miRNA: 3'- -CUCGCA-------------CGGCaa-GCUCgCGCGGUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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