miRNA display CGI


Results 1 - 20 of 941 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 5' -58.9 NC_001847.1 + 106529 0.66 0.804526
Target:  5'- cCCGCgGccGcCGCGuAGC-GCG-CGGCCg -3'
miRNA:   3'- -GGCGgCuuC-GCGC-UCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 133178 0.66 0.795751
Target:  5'- cCUGCgCG-GGCGCGGGCUGCccucGCUg -3'
miRNA:   3'- -GGCG-GCuUCGCGCUCGACGcaguCGG- -5'
6423 5' -58.9 NC_001847.1 + 82636 0.66 0.795751
Target:  5'- gCCGCgCGGc-CGCGcGCUcCGUCAGCUc -3'
miRNA:   3'- -GGCG-GCUucGCGCuCGAcGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 74921 0.66 0.795751
Target:  5'- cUCGCCGAcgacGaCGcCGGGCUGUuuuucGUCGGCg -3'
miRNA:   3'- -GGCGGCUu---C-GC-GCUCGACG-----CAGUCGg -5'
6423 5' -58.9 NC_001847.1 + 122526 0.66 0.795751
Target:  5'- gCCGCCuccauguugaGGAGCGgGGGCccuucCGaCAGCCg -3'
miRNA:   3'- -GGCGG----------CUUCGCgCUCGac---GCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 86308 0.66 0.795751
Target:  5'- gCgGCCGAGGCGCccccGC-GCGgcaaGGCCc -3'
miRNA:   3'- -GgCGGCUUCGCGcu--CGaCGCag--UCGG- -5'
6423 5' -58.9 NC_001847.1 + 79775 0.66 0.795751
Target:  5'- cUCGCCGAccgucuccGGCGCccGCggcGCGUuCAGCa -3'
miRNA:   3'- -GGCGGCU--------UCGCGcuCGa--CGCA-GUCGg -5'
6423 5' -58.9 NC_001847.1 + 66163 0.66 0.795751
Target:  5'- gCCGCUGucuCcCGGGCUgGCGcCGGCCg -3'
miRNA:   3'- -GGCGGCuucGcGCUCGA-CGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 31569 0.66 0.795751
Target:  5'- gCCGCCGgcG-GCGGGCcgGCcUC-GCCc -3'
miRNA:   3'- -GGCGGCuuCgCGCUCGa-CGcAGuCGG- -5'
6423 5' -58.9 NC_001847.1 + 132969 0.66 0.796635
Target:  5'- gCCGCCcaggcGGCGCGGgcGCUGCGagaccuggugcugcgCAGCg -3'
miRNA:   3'- -GGCGGcu---UCGCGCU--CGACGCa--------------GUCGg -5'
6423 5' -58.9 NC_001847.1 + 94854 0.66 0.798399
Target:  5'- gCGCCGAgggggaccuuggggGGCGCGGGCagcucgcaaauccGCGcuUCGGCg -3'
miRNA:   3'- gGCGGCU--------------UCGCGCUCGa------------CGC--AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 3882 0.66 0.804526
Target:  5'- gCgGcCCGucGCGCGGcGCcGCGgcgUAGCCa -3'
miRNA:   3'- -GgC-GGCuuCGCGCU-CGaCGCa--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 3716 0.66 0.804526
Target:  5'- cCCGCgGccGcCGCGuAGC-GCG-CGGCCg -3'
miRNA:   3'- -GGCGgCuuC-GCGC-UCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 51230 0.66 0.804526
Target:  5'- cCUGCuCGcGGGCGCGccGCUGC--CGGCCg -3'
miRNA:   3'- -GGCG-GC-UUCGCGCu-CGACGcaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 48535 0.66 0.804526
Target:  5'- cCCGCCucGAGGCGCGcccggAGCcGCGUaaagaacgaAGCg -3'
miRNA:   3'- -GGCGG--CUUCGCGC-----UCGaCGCAg--------UCGg -5'
6423 5' -58.9 NC_001847.1 + 13108 0.66 0.804526
Target:  5'- gCCGCCGuccuccucGGCuGCG-GCcGCGaUCAGCa -3'
miRNA:   3'- -GGCGGCu-------UCG-CGCuCGaCGC-AGUCGg -5'
6423 5' -58.9 NC_001847.1 + 1189 0.66 0.804526
Target:  5'- aCCGCCGcGGC-CGgcAGCU-CGUCGGgCg -3'
miRNA:   3'- -GGCGGCuUCGcGC--UCGAcGCAGUCgG- -5'
6423 5' -58.9 NC_001847.1 + 106337 0.66 0.804526
Target:  5'- gCGCCu--GCGUGAacgGCgacgGCGUCccGGCCg -3'
miRNA:   3'- gGCGGcuuCGCGCU---CGa---CGCAG--UCGG- -5'
6423 5' -58.9 NC_001847.1 + 22107 0.66 0.804526
Target:  5'- gCGCCGggGgcgacaGCGGGC-GCGcCcugGGCCc -3'
miRNA:   3'- gGCGGCuuCg-----CGCUCGaCGCaG---UCGG- -5'
6423 5' -58.9 NC_001847.1 + 19680 0.66 0.804526
Target:  5'- gUGCCc--GCGCGGGUgugGCGUUuccuuGCCg -3'
miRNA:   3'- gGCGGcuuCGCGCUCGa--CGCAGu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.