miRNA display CGI


Results 1 - 20 of 941 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 5' -58.9 NC_001847.1 + 153 0.7 0.532652
Target:  5'- cCCgGCCGggGgGcCGGGguuCUGCGUCuuGGCCc -3'
miRNA:   3'- -GG-CGGCuuCgC-GCUC---GACGCAG--UCGG- -5'
6423 5' -58.9 NC_001847.1 + 284 0.72 0.422118
Target:  5'- gCCGCCGAGcccGCGCGGGC-GcCGUCcccgcGCCc -3'
miRNA:   3'- -GGCGGCUU---CGCGCUCGaC-GCAGu----CGG- -5'
6423 5' -58.9 NC_001847.1 + 414 0.67 0.711405
Target:  5'- aCCGagggcCCGggGCggGCGGGCgGCGgCGGCg -3'
miRNA:   3'- -GGC-----GGCuuCG--CGCUCGaCGCaGUCGg -5'
6423 5' -58.9 NC_001847.1 + 956 0.66 0.786835
Target:  5'- gCGCCGcuccacgcuGCGcCGGGCgucuaUGCGcCGGCCc -3'
miRNA:   3'- gGCGGCuu-------CGC-GCUCG-----ACGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1097 0.73 0.372252
Target:  5'- gCGCCGcGGcCGCGGGCgGCGccgccgCGGCCu -3'
miRNA:   3'- gGCGGCuUC-GCGCUCGaCGCa-----GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1145 0.7 0.542377
Target:  5'- gCGCCucGGCGCGcGGCUccggcaGCG-CGGCCg -3'
miRNA:   3'- gGCGGcuUCGCGC-UCGA------CGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1189 0.66 0.804526
Target:  5'- aCCGCCGcGGC-CGgcAGCU-CGUCGGgCg -3'
miRNA:   3'- -GGCGGCuUCGcGC--UCGAcGCAGUCgG- -5'
6423 5' -58.9 NC_001847.1 + 1426 0.7 0.532652
Target:  5'- aCCGCgGu-GCGCGGGCccagGCGcgUGGCCa -3'
miRNA:   3'- -GGCGgCuuCGCGCUCGa---CGCa-GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1862 0.66 0.795751
Target:  5'- gCGCCGGAGCGCa--CcGCG-CGGCUu -3'
miRNA:   3'- gGCGGCUUCGCGcucGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1901 0.72 0.452099
Target:  5'- gCGCCGcGAGCGCGuGCgagagcccgccgcgGCGcggCGGCCa -3'
miRNA:   3'- gGCGGC-UUCGCGCuCGa-------------CGCa--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 1937 0.67 0.711405
Target:  5'- -aGCCGGcgcgcGGCGCaGAGCUccuccaGCGagggCAGCCc -3'
miRNA:   3'- ggCGGCU-----UCGCG-CUCGA------CGCa---GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2100 0.7 0.532652
Target:  5'- cCCGCgCGgcG-GCGGGCcGCGaucUCGGCCa -3'
miRNA:   3'- -GGCG-GCuuCgCGCUCGaCGC---AGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2230 0.69 0.630806
Target:  5'- gCGCCGcggcgcuGGGCGCGGGCgUGUGgUAGUCc -3'
miRNA:   3'- gGCGGC-------UUCGCGCUCG-ACGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2303 0.66 0.784133
Target:  5'- gCCGCCGGgcggcaugggccccAGCacgcggGCGGGCaGCGgCGGCUn -3'
miRNA:   3'- -GGCGGCU--------------UCG------CGCUCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2350 0.69 0.621779
Target:  5'- cCCGCCGcgccGGCcCG-GCcGCGUCGGCg -3'
miRNA:   3'- -GGCGGCu---UCGcGCuCGaCGCAGUCGg -5'
6423 5' -58.9 NC_001847.1 + 2487 0.67 0.711405
Target:  5'- cCCGCCGccGUGUGAagacGUcGCGagGGCCg -3'
miRNA:   3'- -GGCGGCuuCGCGCU----CGaCGCagUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2556 0.73 0.372252
Target:  5'- uCCGgCGGgcugucuucGGCGCGGGCgccUGCG-CGGCCg -3'
miRNA:   3'- -GGCgGCU---------UCGCGCUCG---ACGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2640 0.66 0.763046
Target:  5'- aCCGCCGucGcCGCuuGCgGCGccuucgcccggcggcUCGGCCg -3'
miRNA:   3'- -GGCGGCuuC-GCGcuCGaCGC---------------AGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2783 0.75 0.305306
Target:  5'- cCCGCCGGcggccuccagGGcCGCGAGCgcgGCcGcCAGCCg -3'
miRNA:   3'- -GGCGGCU----------UC-GCGCUCGa--CG-CaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 2835 0.69 0.631809
Target:  5'- uCCGCCGGcgggcugaacAGCGCGcGCgccaGCGcccaGGCCg -3'
miRNA:   3'- -GGCGGCU----------UCGCGCuCGa---CGCag--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.