miRNA display CGI


Results 1 - 20 of 941 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 5' -58.9 NC_001847.1 + 77086 1.13 0.000746
Target:  5'- gCCGCCGAAGCGCGAGCUGCGUCAGCCg -3'
miRNA:   3'- -GGCGGCUUCGCGCUCGACGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 70378 0.88 0.041371
Target:  5'- gCGCCGggGCGCGAGCUcGCGcUGGCCa -3'
miRNA:   3'- gGCGGCuuCGCGCUCGA-CGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 132529 0.85 0.066698
Target:  5'- cCCGCCGAAGCaccuccggcgcgGCGGGCUcGCGUgCGGCCg -3'
miRNA:   3'- -GGCGGCUUCG------------CGCUCGA-CGCA-GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 37438 0.83 0.095922
Target:  5'- cCCGCCGAcgacggcgagcgcAGCaGCGGGcCUGCGUUGGCCg -3'
miRNA:   3'- -GGCGGCU-------------UCG-CGCUC-GACGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 14844 0.82 0.109424
Target:  5'- -aGCCGGccccgcAGCGCGAGCguUGCGUCGGUCg -3'
miRNA:   3'- ggCGGCU------UCGCGCUCG--ACGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 89345 0.81 0.127582
Target:  5'- cCCGCCGGGcuuuGCGCgcuucgGAGCUGUGUUGGCCg -3'
miRNA:   3'- -GGCGGCUU----CGCG------CUCGACGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 134579 0.8 0.141198
Target:  5'- gCGCCGGAGaCGCGGcGCUgGCGUCcGCCg -3'
miRNA:   3'- gGCGGCUUC-GCGCU-CGA-CGCAGuCGG- -5'
6423 5' -58.9 NC_001847.1 + 31766 0.8 0.141198
Target:  5'- gCGCCGGAGaCGCGGcGCUgGCGUCcGCCg -3'
miRNA:   3'- gGCGGCUUC-GCGCU-CGA-CGCAGuCGG- -5'
6423 5' -58.9 NC_001847.1 + 15220 0.8 0.148495
Target:  5'- gUCGCCGcGGU-CGAGCUgGCGUCGGCCg -3'
miRNA:   3'- -GGCGGCuUCGcGCUCGA-CGCAGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 13937 0.79 0.160084
Target:  5'- aCGgCGucauGCGCGAGCUGCGgcugCGGCCc -3'
miRNA:   3'- gGCgGCuu--CGCGCUCGACGCa---GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 83584 0.79 0.172482
Target:  5'- gCCGCgGAAGCgcugGCGAGCUGCGcCGacGCCu -3'
miRNA:   3'- -GGCGgCUUCG----CGCUCGACGCaGU--CGG- -5'
6423 5' -58.9 NC_001847.1 + 27216 0.79 0.172482
Target:  5'- gCGCCGggGCGCucGAGCUGCG--GGUCg -3'
miRNA:   3'- gGCGGCuuCGCG--CUCGACGCagUCGG- -5'
6423 5' -58.9 NC_001847.1 + 102874 0.79 0.172482
Target:  5'- aCGCgGAcGGCGCGAGCcacgcacgcgucUGCGUCAGCg -3'
miRNA:   3'- gGCGgCU-UCGCGCUCG------------ACGCAGUCGg -5'
6423 5' -58.9 NC_001847.1 + 34756 0.79 0.181218
Target:  5'- gCgGCCGAgcuGGCGCG-GCUGCGcgccgCGGCCg -3'
miRNA:   3'- -GgCGGCU---UCGCGCuCGACGCa----GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 11341 0.78 0.185731
Target:  5'- gCGCCGGAGCGgGAGCacucguacGCG-CGGCCg -3'
miRNA:   3'- gGCGGCUUCGCgCUCGa-------CGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 4232 0.78 0.190343
Target:  5'- gUGCCGgcGCGCgccggcacGAGCUGCGccagCAGCCa -3'
miRNA:   3'- gGCGGCuuCGCG--------CUCGACGCa---GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 101046 0.78 0.199869
Target:  5'- uCCGCCGccGCGCGAGCcaCGgCGGCCg -3'
miRNA:   3'- -GGCGGCuuCGCGCUCGacGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 106948 0.78 0.199869
Target:  5'- gCCGCCGuGGCGCGcaGGC-GCG-CGGCCg -3'
miRNA:   3'- -GGCGGCuUCGCGC--UCGaCGCaGUCGG- -5'
6423 5' -58.9 NC_001847.1 + 80054 0.78 0.204786
Target:  5'- gCCGCCGAGGUGCGAGaacgacgUGCccacCAGCCg -3'
miRNA:   3'- -GGCGGCUUCGCGCUCg------ACGca--GUCGG- -5'
6423 5' -58.9 NC_001847.1 + 105675 0.78 0.209808
Target:  5'- gCCGCCucGGcCGCGGGCgGCGcuUCGGCCg -3'
miRNA:   3'- -GGCGGcuUC-GCGCUCGaCGC--AGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.