Results 1 - 20 of 941 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6423 | 5' | -58.9 | NC_001847.1 | + | 70378 | 0.88 | 0.041371 |
Target: 5'- gCGCCGggGCGCGAGCUcGCGcUGGCCa -3' miRNA: 3'- gGCGGCuuCGCGCUCGA-CGCaGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 5754 | 0.77 | 0.230964 |
Target: 5'- aCCGCCGuccGGCGCGccaacgcgaAGCgcgGCGUCuAGCCc -3' miRNA: 3'- -GGCGGCu--UCGCGC---------UCGa--CGCAG-UCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 18779 | 0.77 | 0.242202 |
Target: 5'- gCgGCCGAcAGCGCGAGCUccGCGgCGGCg -3' miRNA: 3'- -GgCGGCU-UCGCGCUCGA--CGCaGUCGg -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 106529 | 0.66 | 0.804526 |
Target: 5'- cCCGCgGccGcCGCGuAGC-GCG-CGGCCg -3' miRNA: 3'- -GGCGgCuuC-GCGC-UCGaCGCaGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 27216 | 0.79 | 0.172482 |
Target: 5'- gCGCCGggGCGCucGAGCUGCG--GGUCg -3' miRNA: 3'- gGCGGCuuCGCG--CUCGACGCagUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 83584 | 0.79 | 0.172482 |
Target: 5'- gCCGCgGAAGCgcugGCGAGCUGCGcCGacGCCu -3' miRNA: 3'- -GGCGgCUUCG----CGCUCGACGCaGU--CGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 11341 | 0.78 | 0.185731 |
Target: 5'- gCGCCGGAGCGgGAGCacucguacGCG-CGGCCg -3' miRNA: 3'- gGCGGCUUCGCgCUCGa-------CGCaGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 4232 | 0.78 | 0.190343 |
Target: 5'- gUGCCGgcGCGCgccggcacGAGCUGCGccagCAGCCa -3' miRNA: 3'- gGCGGCuuCGCG--------CUCGACGCa---GUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 99735 | 0.77 | 0.214935 |
Target: 5'- -aGCCGcuGCGCGGG-UGCGUUGGCCg -3' miRNA: 3'- ggCGGCuuCGCGCUCgACGCAGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 29329 | 0.77 | 0.230964 |
Target: 5'- -aGCCGcGAGCGCGAGUgcGCGggCGGCCg -3' miRNA: 3'- ggCGGC-UUCGCGCUCGa-CGCa-GUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 34931 | 0.77 | 0.220169 |
Target: 5'- gCCGCCGcuGGCGC-AGCUGCG-CGGCa -3' miRNA: 3'- -GGCGGCu-UCGCGcUCGACGCaGUCGg -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 106606 | 0.78 | 0.209808 |
Target: 5'- gCCGCCGAAGCGCacgcggccGGGCgGCGgCGGCg -3' miRNA: 3'- -GGCGGCUUCGCG--------CUCGaCGCaGUCGg -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 134579 | 0.8 | 0.141198 |
Target: 5'- gCGCCGGAGaCGCGGcGCUgGCGUCcGCCg -3' miRNA: 3'- gGCGGCUUC-GCGCU-CGA-CGCAGuCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 124580 | 0.77 | 0.225512 |
Target: 5'- gCCGCCGgcGC-CGGGCccgGCGcCGGCCg -3' miRNA: 3'- -GGCGGCuuCGcGCUCGa--CGCaGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 15220 | 0.8 | 0.148495 |
Target: 5'- gUCGCCGcGGU-CGAGCUgGCGUCGGCCg -3' miRNA: 3'- -GGCGGCuUCGcGCUCGA-CGCAGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 80054 | 0.78 | 0.204786 |
Target: 5'- gCCGCCGAGGUGCGAGaacgacgUGCccacCAGCCg -3' miRNA: 3'- -GGCGGCUUCGCGCUCg------ACGca--GUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 131905 | 0.77 | 0.230414 |
Target: 5'- gCCGCCGGcgagcacGGCGCGGGCgGCGcgcgagCGGCUg -3' miRNA: 3'- -GGCGGCU-------UCGCGCUCGaCGCa-----GUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 18122 | 0.77 | 0.235405 |
Target: 5'- cCCGCCGGgcagacaggAGCGCccaggcgaaaauAGCUGCGaUCAGCCa -3' miRNA: 3'- -GGCGGCU---------UCGCGc-----------UCGACGC-AGUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 13937 | 0.79 | 0.160084 |
Target: 5'- aCGgCGucauGCGCGAGCUGCGgcugCGGCCc -3' miRNA: 3'- gGCgGCuu--CGCGCUCGACGCa---GUCGG- -5' |
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6423 | 5' | -58.9 | NC_001847.1 | + | 34756 | 0.79 | 0.181218 |
Target: 5'- gCgGCCGAgcuGGCGCG-GCUGCGcgccgCGGCCg -3' miRNA: 3'- -GgCGGCU---UCGCGCuCGACGCa----GUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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