Results 21 - 40 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 95137 | 0.66 | 0.387808 |
Target: 5'- uCGCCggcGCUGcGCuuGGG-GGUGCCGg -3' miRNA: 3'- -GCGGga-CGGCaCGggCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 128019 | 0.66 | 0.387808 |
Target: 5'- uGCUCacggGCCaGgaggaGCCCGGccGUGGCGCCu -3' miRNA: 3'- gCGGGa---CGG-Ca----CGGGCC--CACCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 129356 | 0.66 | 0.395658 |
Target: 5'- gCGCggUGCCGgGCCCGGGgcuaGaCGCCGc -3' miRNA: 3'- -GCGggACGGCaCGGGCCCac--C-GCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 23853 | 0.66 | 0.395658 |
Target: 5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3' miRNA: 3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 76406 | 0.66 | 0.400418 |
Target: 5'- cCGCCgCUGUCGggccgccggaggaGCCCgGGGUGGcCGCg- -3' miRNA: 3'- -GCGG-GACGGCa------------CGGG-CCCACC-GCGgc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 121670 | 0.66 | 0.403611 |
Target: 5'- cCGCCgCUGUgGggugcgGCCCGagcaGGUGcGCGCCc -3' miRNA: 3'- -GCGG-GACGgCa-----CGGGC----CCAC-CGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 124290 | 0.66 | 0.403611 |
Target: 5'- gCGCCC-GCCGcGCCuCGGccacGCGCCGc -3' miRNA: 3'- -GCGGGaCGGCaCGG-GCCcac-CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 84647 | 0.66 | 0.403611 |
Target: 5'- gGCCCgcGCCGUugauagauacGgCCGGaccGGCGCCGg -3' miRNA: 3'- gCGGGa-CGGCA----------CgGGCCca-CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 88239 | 0.66 | 0.411664 |
Target: 5'- aGCCgagGCCG-GCgCGGcGcggGGCGCCGg -3' miRNA: 3'- gCGGga-CGGCaCGgGCC-Ca--CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 89624 | 0.66 | 0.411664 |
Target: 5'- gGCCCcGuCCGcgccGCCCGGcGgcGGCGCCc -3' miRNA: 3'- gCGGGaC-GGCa---CGGGCC-Ca-CCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 121778 | 0.66 | 0.395658 |
Target: 5'- gCGCUCauuUGCCGUGUagCCGGGcgccucUGaGUGCCGu -3' miRNA: 3'- -GCGGG---ACGGCACG--GGCCC------AC-CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 119504 | 0.66 | 0.395658 |
Target: 5'- aGCCCgaGCCcgaGCCCGGaGgGGCGgCGg -3' miRNA: 3'- gCGGGa-CGGca-CGGGCC-CaCCGCgGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 2866 | 0.66 | 0.387808 |
Target: 5'- gCGCCCagGCCGacGCgCGGGccgccGCGCCGc -3' miRNA: 3'- -GCGGGa-CGGCa-CGgGCCCac---CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 47805 | 0.66 | 0.387808 |
Target: 5'- gGCCCUcgGCCGacaCCGGGgacgGGaUGCCGg -3' miRNA: 3'- gCGGGA--CGGCacgGGCCCa---CC-GCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 74283 | 0.66 | 0.387808 |
Target: 5'- cCGCCCUcgcGCUGgacGCCC---UGGCGCCGc -3' miRNA: 3'- -GCGGGA---CGGCa--CGGGcccACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 75806 | 0.66 | 0.387808 |
Target: 5'- cCGCCCccgaUGCCG-GgCUGGuacGGCGCCGc -3' miRNA: 3'- -GCGGG----ACGGCaCgGGCCca-CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 76314 | 0.66 | 0.387808 |
Target: 5'- gGCCCaagUGCCGacccucGCaCCGGcccaGGCGCCGg -3' miRNA: 3'- gCGGG---ACGGCa-----CG-GGCCca--CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 123610 | 0.66 | 0.393292 |
Target: 5'- aGCCCaGCCaaggcggcaaacucgGCCgGGGcGGCGCCc -3' miRNA: 3'- gCGGGaCGGca-------------CGGgCCCaCCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 35492 | 0.66 | 0.395658 |
Target: 5'- gGUCCgGCgCGcguuaUGCUCGGcGUGcGCGCCGg -3' miRNA: 3'- gCGGGaCG-GC-----ACGGGCC-CAC-CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 55892 | 0.66 | 0.395658 |
Target: 5'- gGCCCgacGCCGgcuagcaGCUCGGGgagcGCGCCc -3' miRNA: 3'- gCGGGa--CGGCa------CGGGCCCac--CGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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