miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 103752 0.71 0.188055
Target:  5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3'
miRNA:   3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 135021 0.71 0.179451
Target:  5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3'
miRNA:   3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 131152 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 39832 0.76 0.088947
Target:  5'- gGCCCUGCCGgcgccgcGCCUGGa-GGCGCCa -3'
miRNA:   3'- gCGGGACGGCa------CGGGCCcaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 73701 0.7 0.221076
Target:  5'- cCGCCUcGCCGcGCCCGGcGgcgcggccgcgGGCGUCGa -3'
miRNA:   3'- -GCGGGaCGGCaCGGGCC-Ca----------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 3396 0.7 0.211166
Target:  5'- aGCCCUccgcaagcaGCgGgagagcaGCCCGGG-GGCGCCa -3'
miRNA:   3'- gCGGGA---------CGgCa------CGGGCCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 64449 0.72 0.1672
Target:  5'- gCGCCCccGCCGccGCCCGcGGcGGCGCgGg -3'
miRNA:   3'- -GCGGGa-CGGCa-CGGGC-CCaCCGCGgC- -5'
6424 5' -67.3 NC_001847.1 + 106050 0.76 0.078556
Target:  5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3'
miRNA:   3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 48831 0.7 0.206356
Target:  5'- gGCCUUGCC--GCgCGGG-GGCGCCu -3'
miRNA:   3'- gCGGGACGGcaCGgGCCCaCCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 134177 0.77 0.065943
Target:  5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3'
miRNA:   3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 76641 0.71 0.175281
Target:  5'- uGCCCgucGCCcUGCCCGaGGgcggggagGGCGCCu -3'
miRNA:   3'- gCGGGa--CGGcACGGGC-CCa-------CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 133192 0.71 0.190706
Target:  5'- cCGCCCggcgaggacgagcGCCGgcgGCCCGaGUGGCcGCCGc -3'
miRNA:   3'- -GCGGGa------------CGGCa--CGGGCcCACCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 103903 0.72 0.155704
Target:  5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3'
miRNA:   3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 700 0.73 0.138127
Target:  5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3'
miRNA:   3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 88681 0.73 0.125397
Target:  5'- gGCCCUGUacguaaGUGCCCuGGcGGCGCUGc -3'
miRNA:   3'- gCGGGACGg-----CACGGGcCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 63537 0.75 0.091176
Target:  5'- cCGCgCUGCUGgcgccGCCUGGGccGGCGCCGg -3'
miRNA:   3'- -GCGgGACGGCa----CGGGCCCa-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 105930 0.7 0.231379
Target:  5'- gGCCCgccgcgGCCGagaGCaCCGGGagcccggcGGCGCCGg -3'
miRNA:   3'- gCGGGa-----CGGCa--CG-GGCCCa-------CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 28055 0.7 0.226178
Target:  5'- gGCgCUGCUGgcggaaaaccUGCCCGGucuggugcuGUGGCGCCu -3'
miRNA:   3'- gCGgGACGGC----------ACGGGCC---------CACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 66166 0.7 0.216072
Target:  5'- uGCUCUcgGCCGUGCCCgcgcGGGccGCGCUGg -3'
miRNA:   3'- gCGGGA--CGGCACGGG----CCCacCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 78937 0.7 0.211166
Target:  5'- aGCCCUGCUggcccuGUGCCCcgcaGGcUGGCGCUc -3'
miRNA:   3'- gCGGGACGG------CACGGGc---CC-ACCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.