Results 41 - 60 of 269 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 5' | -67.3 | NC_001847.1 | + | 132364 | 0.7 | 0.216072 |
Target: 5'- gGCCCUGgaGgccGCCggCGGG-GGCGCCGg -3' miRNA: 3'- gCGGGACggCa--CGG--GCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 64449 | 0.72 | 0.1672 |
Target: 5'- gCGCCCccGCCGccGCCCGcGGcGGCGCgGg -3' miRNA: 3'- -GCGGGa-CGGCa-CGGGC-CCaCCGCGgC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 106050 | 0.76 | 0.078556 |
Target: 5'- cCGCCCgcGCCGUGCucgCCGGcGgcaggGGCGCCGg -3' miRNA: 3'- -GCGGGa-CGGCACG---GGCC-Ca----CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 24305 | 0.7 | 0.216072 |
Target: 5'- gGCCCUggaaGCCGaUGCCCagcgagcGGUGGCGCg- -3' miRNA: 3'- gCGGGA----CGGC-ACGGGc------CCACCGCGgc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 134177 | 0.77 | 0.065943 |
Target: 5'- aGCCCcGCCG-GCCCGGGUgccGGCGCa- -3' miRNA: 3'- gCGGGaCGGCaCGGGCCCA---CCGCGgc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 33521 | 0.68 | 0.276681 |
Target: 5'- gGCgCC-GCCGcggagGCgCCGGGcgcgGGCGCCGa -3' miRNA: 3'- gCG-GGaCGGCa----CG-GGCCCa---CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 63537 | 0.75 | 0.091176 |
Target: 5'- cCGCgCUGCUGgcgccGCCUGGGccGGCGCCGg -3' miRNA: 3'- -GCGgGACGGCa----CGGGCCCa-CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 100610 | 0.69 | 0.270652 |
Target: 5'- aGCCCgGCCaG-GCUCGGGcccUGGCGaCCGc -3' miRNA: 3'- gCGGGaCGG-CaCGGGCCC---ACCGC-GGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 49898 | 0.69 | 0.264729 |
Target: 5'- gGCaCgUGCUGgGCCCGgccgcGGUGGCGCUGc -3' miRNA: 3'- gCG-GgACGGCaCGGGC-----CCACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 132051 | 0.69 | 0.253198 |
Target: 5'- gCGgCCUGCCG-GCCgCGGccUGcGCGCCGg -3' miRNA: 3'- -GCgGGACGGCaCGG-GCCc-AC-CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 122910 | 0.69 | 0.24759 |
Target: 5'- aGCCCUcGCCGU--UCGGGUGugcgcGCGCCGc -3' miRNA: 3'- gCGGGA-CGGCAcgGGCCCAC-----CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 105930 | 0.7 | 0.231379 |
Target: 5'- gGCCCgccgcgGCCGagaGCaCCGGGagcccggcGGCGCCGg -3' miRNA: 3'- gCGGGa-----CGGCa--CG-GGCCCa-------CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 28055 | 0.7 | 0.226178 |
Target: 5'- gGCgCUGCUGgcggaaaaccUGCCCGGucuggugcuGUGGCGCCu -3' miRNA: 3'- gCGgGACGGC----------ACGGGCC---------CACCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 68933 | 0.7 | 0.211166 |
Target: 5'- gCGCCCgaGCCGccgCUGGGcGGCGCCGa -3' miRNA: 3'- -GCGGGa-CGGCacgGGCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 48831 | 0.7 | 0.206356 |
Target: 5'- gGCCUUGCC--GCgCGGG-GGCGCCu -3' miRNA: 3'- gCGGGACGGcaCGgGCCCaCCGCGGc -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 103752 | 0.71 | 0.188055 |
Target: 5'- aGCCCgagcCCGcGCCCGGGgacgacuGCGCCGg -3' miRNA: 3'- gCGGGac--GGCaCGGGCCCac-----CGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 135021 | 0.71 | 0.179451 |
Target: 5'- gGCCCgcggGCgGgGCCgGGGcgcggGGCGCCGg -3' miRNA: 3'- gCGGGa---CGgCaCGGgCCCa----CCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 103903 | 0.72 | 0.155704 |
Target: 5'- aCGCCgggcGCCGcgGCCgCGGGcGGCGCCGc -3' miRNA: 3'- -GCGGga--CGGCa-CGG-GCCCaCCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 700 | 0.73 | 0.138127 |
Target: 5'- uGCCCUGCCGcaaguuuaUGCUguaucugaugCGcGGUGGUGCCGu -3' miRNA: 3'- gCGGGACGGC--------ACGG----------GC-CCACCGCGGC- -5' |
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6424 | 5' | -67.3 | NC_001847.1 | + | 88681 | 0.73 | 0.125397 |
Target: 5'- gGCCCUGUacguaaGUGCCCuGGcGGCGCUGc -3' miRNA: 3'- gCGGGACGg-----CACGGGcCCaCCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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