miRNA display CGI


Results 41 - 60 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 5' -67.3 NC_001847.1 + 18398 0.72 0.159454
Target:  5'- uCGCCCUGCgG-GCCCGcGG-GGCuGUCGa -3'
miRNA:   3'- -GCGGGACGgCaCGGGC-CCaCCG-CGGC- -5'
6424 5' -67.3 NC_001847.1 + 18719 0.68 0.276681
Target:  5'- cCGCCCUcgagcccaaGCgCGcgGCCCGGGgcccaGaGCGCCGc -3'
miRNA:   3'- -GCGGGA---------CG-GCa-CGGGCCCa----C-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 18988 0.66 0.372417
Target:  5'- gCGCCCgcgGCCGccagcGCCuCGGGccGcGCGCCc -3'
miRNA:   3'- -GCGGGa--CGGCa----CGG-GCCCa-C-CGCGGc -5'
6424 5' -67.3 NC_001847.1 + 19355 0.67 0.357447
Target:  5'- gGUCUUGCgCGcGCCCGacGGUGGCcaggGCCGc -3'
miRNA:   3'- gCGGGACG-GCaCGGGC--CCACCG----CGGC- -5'
6424 5' -67.3 NC_001847.1 + 19613 0.73 0.144928
Target:  5'- gGCCCgaGCuCGgGCCCGGGgcgccGGCGUCGg -3'
miRNA:   3'- gCGGGa-CG-GCaCGGGCCCa----CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 19662 0.75 0.105705
Target:  5'- gGCCCgGCCGccggaaacUGCgaCCGGGUGcGCGCCGu -3'
miRNA:   3'- gCGGGaCGGC--------ACG--GGCCCAC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 19847 0.81 0.035923
Target:  5'- gCGCCCUugGcCCGcGCCCGGG-GGCGCCGg -3'
miRNA:   3'- -GCGGGA--C-GGCaCGGGCCCaCCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 21748 0.71 0.181144
Target:  5'- gGCCCgcgcgcgcggggggGCCGccgGCgCCGGGcccGGCGCCGg -3'
miRNA:   3'- gCGGGa-------------CGGCa--CG-GGCCCa--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 23853 0.66 0.395658
Target:  5'- cCGCCCccgGCCGagcgccgccCCCGGcccGGCGCCGc -3'
miRNA:   3'- -GCGGGa--CGGCac-------GGGCCca-CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 24216 0.66 0.411664
Target:  5'- cCGCCCcGCgGUuguacgggGCCacguGGGUcGGCGCCu -3'
miRNA:   3'- -GCGGGaCGgCA--------CGGg---CCCA-CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 24305 0.7 0.216072
Target:  5'- gGCCCUggaaGCCGaUGCCCagcgagcGGUGGCGCg- -3'
miRNA:   3'- gCGGGA----CGGC-ACGGGc------CCACCGCGgc -5'
6424 5' -67.3 NC_001847.1 + 26509 0.66 0.38006
Target:  5'- gGgCCUGCCGgGCgCGGGgccgggGGCGuUCGg -3'
miRNA:   3'- gCgGGACGGCaCGgGCCCa-----CCGC-GGC- -5'
6424 5' -67.3 NC_001847.1 + 27458 0.66 0.38006
Target:  5'- gGCCCUGCCGcUGCCCGc----CGCCc -3'
miRNA:   3'- gCGGGACGGC-ACGGGCccaccGCGGc -5'
6424 5' -67.3 NC_001847.1 + 28055 0.7 0.226178
Target:  5'- gGCgCUGCUGgcggaaaaccUGCCCGGucuggugcuGUGGCGCCu -3'
miRNA:   3'- gCGgGACGGC----------ACGGGCC---------CACCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 28339 0.73 0.134837
Target:  5'- gCGCCCcgcgggGCCGcgcGCCCGGGcccccGGCGCCc -3'
miRNA:   3'- -GCGGGa-----CGGCa--CGGGCCCa----CCGCGGc -5'
6424 5' -67.3 NC_001847.1 + 28986 0.67 0.335794
Target:  5'- aCGCCCccaugGCCua-CCCGGaGgccGGCGCCGg -3'
miRNA:   3'- -GCGGGa----CGGcacGGGCC-Ca--CCGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 29084 0.68 0.281582
Target:  5'- gCGcCCCUGCCGccggcgagcacgGCgCGGGcGGCGCgCGa -3'
miRNA:   3'- -GC-GGGACGGCa-----------CGgGCCCaCCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 29238 0.69 0.253198
Target:  5'- gCGgCCUGCCG-GCCgCGGccUGcGCGCCGg -3'
miRNA:   3'- -GCgGGACGGCaCGG-GCCc-AC-CGCGGC- -5'
6424 5' -67.3 NC_001847.1 + 29467 0.69 0.270652
Target:  5'- gGCCCgcgcGUCG-GCCUGGGcgcUGGCGCgCGc -3'
miRNA:   3'- gCGGGa---CGGCaCGGGCCC---ACCGCG-GC- -5'
6424 5' -67.3 NC_001847.1 + 29494 0.67 0.328792
Target:  5'- aCGCUCU-CCG-GCCgCGGGcGGCGCUu -3'
miRNA:   3'- -GCGGGAcGGCaCGG-GCCCaCCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.